Factsheet for Bra014000.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
plastid 2
mitochondrion 8

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra013997.1-P	Field mustard	mitochondrion	65.32	100.0
CDY53035	Canola	mitochondrion	67.57	99.34
CDY47311	Canola	mitochondrion	64.41	99.31
Bra037056.1-P	Field mustard	mitochondrion	59.46	88.0
AT4G13850.1	Thale cress	mitochondrion	58.56	82.28
Solyc05g053780.2.1	Tomato	mitochondrion	46.85	64.6
Solyc09g092320.2.1	Tomato	mitochondrion, nucleus	32.43	62.07
PGSC0003DMT400040748	Potato	mitochondrion	40.09	61.38
KRG97345	Soybean	mitochondrion	38.29	60.28
VIT_05s0029g00440.t01	Wine grape	mitochondrion, nucleus, plastid	40.09	58.55
PGSC0003DMT400053017	Potato	mitochondrion, plastid	39.64	57.89
GSMUA_Achr7P02750_001	Banana	mitochondrion	38.74	57.33
GSMUA_Achr4P16080_001	Banana	mitochondrion	43.24	50.53
Bra001972.1-P	Field mustard	nucleus	35.59	48.17
Bra010693.1-P	Field mustard	nucleus	35.14	47.27
KRH31570	Soybean	mitochondrion	30.63	46.9
Bra030284.1-P	Field mustard	nucleus	35.14	46.43
Bra031210.1-P	Field mustard	nucleus	35.14	46.43
Bra011869.1-P	Field mustard	cytosol	33.33	45.68
Bra025674.1-P	Field mustard	mitochondrion	28.38	43.45
Bra002976.1-P	Field mustard	mitochondrion	16.67	35.58
Bra020279.1-P	Field mustard	mitochondrion	17.12	34.55
Bra005189.1-P	Field mustard	plastid	21.62	33.33
Bra029692.1-P	Field mustard	mitochondrion	21.17	32.87
Bra008142.1-P	Field mustard	mitochondrion	36.49	30.68
Bra015926.1-P	Field mustard	mitochondrion	37.84	29.47
Bra028739.1-P	Field mustard	mitochondrion	19.37	29.45
Bra035944.1-P	Field mustard	plastid	34.68	29.28
Bra012986.1-P	Field mustard	mitochondrion	37.84	27.54
Bra029020.1-P	Field mustard	plastid	18.92	27.45
Bra008020.1-P	Field mustard	endoplasmic reticulum	25.23	26.92
Bra008100.1-P	Field mustard	cytosol	9.91	26.83
Bra025205.1-P	Field mustard	nucleus	24.77	23.71
Bra000516.1-P	Field mustard	mitochondrion	13.96	23.13
Bra032933.1-P	Field mustard	nucleus	25.23	23.05
Bra005798.1-P	Field mustard	nucleus	23.87	17.32
Bra003841.1-P	Field mustard	cytosol, nucleus, plastid	15.32	13.23
Bra031244.1-P	Field mustard	plastid	19.37	11.53

Protein Annotations

EnsemblPlants:Bra014000.1	EnsemblPlants:Bra014000.1-P	EnsemblPlantsGene:Bra014000	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf
InterPro:RRM_dom	PANTHER:PTHR44202	PFAM:PF00076	PFscan:PS50102	SEG:seg	SMART:SM00360
SUPFAM:SSF54928	UniParc:UPI0002546EB2	UniProt:M4DBY8	MapMan:16.7.2	MapMan:16.12.5.2	:

Description

AT4G13850 (E=3e-051) ATGRP2 | GR-RBP2 (GLYCINE-RICH RNA-BINDING PROTEIN 2); ATP binding / RNA binding / double-stranded DNA binding / single-stranded DNA binding

Coordinates

chrA08:-:4740631..4741563

Molecular Weight (calculated)

20406.2 Da

IEP (calculated)

6.657

GRAVY (calculated)

-0.405

Length

222 amino acids

Sequence
(BLAST)

001: MAFCKSLGGL LRQGAVSQTG NVPVQSMLGS LRYMSTKLFV GGLSWGTDDQ SLREAFSNFG EVIDSKVIVD RETGRSRGFG FVNFSDESAA NAAISEMDGK
101: ELNGRNIRVN VANDRPSAPR AYGGGGGGYG GGGGGYGGGG GGYGGGGGGY GGGGGGYGGG GGGYGGGGGG YGGGGGGYGG GGGGYGGGGG GYGGGGGGYG
201: GGGGGYGGGG GGYGGGGDGG GY

Best Arabidopsis Sequence Match ( AT4G13850.1 )
(BLAST)

001: MAFCNKLGGL LRQNISSNGN VPVTSMLGSL RLMSTKLFIG GLSWGTDDAS LRDAFAHFGD VVDAKVIVDR ETGRSRGFGF VNFNDEGAAT AAISEMDGKE
101: LNGRHIRVNP ANDRPSAPRA YGGGGGYSGG GGGYGGGGGG YGGGGGGYGG GGDGGGGF

Arabidopsis Description

RBG2Glycine-rich RNA-binding protein 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SVM8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.