Factsheet for Bra008020.1-P

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

extracellular 4
endoplasmic reticulum 6
vacuole 4
plasma membrane 4
golgi 4
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	secretory
EpiLoc:	mitochondrion
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY65478	Canola	endoplasmic reticulum	99.04	99.04
Bra037056.1-P	Field mustard	mitochondrion	27.4	38.0
Bra013997.1-P	Field mustard	mitochondrion	25.96	37.24
Bra008142.1-P	Field mustard	mitochondrion	41.35	32.58
Bra025674.1-P	Field mustard	mitochondrion	22.12	31.72
GSMUA_Achr2P19090_001	Banana	mitochondrion	15.87	31.13
Bra015926.1-P	Field mustard	mitochondrion	41.35	30.18
TraesCS1A01G405700.1	Wheat	mitochondrion	15.87	29.73
AT1G74230.1	Thale cress	mitochondrion, plastid	40.87	29.41
TraesCS3A01G534200.1	Wheat	mitochondrion	15.38	29.36
TraesCS3B01G610900.1	Wheat	mitochondrion	15.38	29.36
Bra002976.1-P	Field mustard	mitochondrion	14.42	28.85
Bra028739.1-P	Field mustard	mitochondrion	20.19	28.77
HORVU3Hr1G116710.1	Barley	mitochondrion	16.35	27.87
TraesCS3D01G539400.1	Wheat	mitochondrion	14.42	27.52
Bra020279.1-P	Field mustard	mitochondrion	14.42	27.27
Bra000516.1-P	Field mustard	mitochondrion	17.31	26.87
Bra030284.1-P	Field mustard	nucleus	21.63	26.79
Os01t0974701-01	Rice	mitochondrion	14.42	25.86
Bra001972.1-P	Field mustard	nucleus	20.19	25.61
Bra031210.1-P	Field mustard	nucleus	20.67	25.6
VIT_05s0094g00380.t01	Wine grape	mitochondrion	13.46	25.45
Bra014000.1-P	Field mustard	mitochondrion	26.92	25.23
Bra029692.1-P	Field mustard	mitochondrion	17.31	25.17
Zm00001d041949_P001	Maize	mitochondrion	12.98	25.0
Bra005189.1-P	Field mustard	plastid	17.31	25.0
PGSC0003DMT400072235	Potato	mitochondrion, nucleus	30.77	24.33
Bra035944.1-P	Field mustard	plastid	29.81	23.57
Bra011869.1-P	Field mustard	cytosol	18.27	23.46
KRH24832	Soybean	endoplasmic reticulum	15.87	23.4
Solyc10g081180.1.1	Tomato	nucleus	24.52	23.18
Bra010693.1-P	Field mustard	nucleus	18.27	23.03
EES02151	Sorghum	mitochondrion, plastid	15.87	22.6
Bra029020.1-P	Field mustard	plastid	16.35	22.22
KRH24829	Soybean	mitochondrion	15.38	21.92
Bra012986.1-P	Field mustard	mitochondrion	29.81	20.33
Bra008100.1-P	Field mustard	cytosol	7.21	18.29
Bra025205.1-P	Field mustard	nucleus	18.75	16.81
Bra032933.1-P	Field mustard	nucleus	18.27	15.64
KRH40931	Soybean	mitochondrion	15.38	13.85
Bra003841.1-P	Field mustard	cytosol, nucleus, plastid	13.94	11.28
Bra005798.1-P	Field mustard	nucleus	14.42	9.8
Bra031244.1-P	Field mustard	plastid	16.35	9.12

Protein Annotations

MapMan:16.12.5.2	Gene3D:3.30.70.330	EnsemblPlantsGene:Bra008020	EnsemblPlants:Bra008020.1	EnsemblPlants:Bra008020.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:IPR000504	InterPro:IPR012677	UniProt:M4CUX5	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102
PANTHER:PTHR44212	PANTHER:PTHR44212:SF3	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928
SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI0002546FEE	SEG:seg	:	:

Description

AT1G74230 (E=1e-036) GR-RBP5 | GR-RBP5 (glycine-rich RNA-binding protein 5); ATP binding / RNA binding

Coordinates

chrA02:-:12590248..12591918

Molecular Weight (calculated)

23649.4 Da

IEP (calculated)

4.314

GRAVY (calculated)

0.247

Length

208 amino acids

Sequence
(BLAST)

001: MLLFLMFRSL IDCSLFAGFS EFDLGFNLCH QKKVEFYIGD ALRQTSTNVT DSNSMLQSIR CMSSSKIFVG GISYSTDEFG LREAFSKYGQ VVDAKIFVDR
101: ETGRSRGFAF VTFTSNLEAT NAMQLDRQAI YCFCFLEHST FMVEELGWTS LLKEEEDLEE GGWVVQVVVL FFMMILYRVV TLTIFLFGAI DNLAWQFGGS
201: ENESLIPP

Best Arabidopsis Sequence Match ( AT1G74230.1 )
(BLAST)

001: MAFLSKVGRL FSQTSSHVTA SSSMLQSIRC MSSSKIFVGG ISYSTDEFGL REAFSKYGEV VDAKIIVDRE TGRSRGFAFV TFTSTEEASN AMQLDGQDLH
101: GRRIRVNYAT ERGSGFGGRG FGGPGGGYGA SDGGYGAPAG GYGGGAGGYG GNSSYSGNAG GGGGYGGNSS YGGNAGGYGG NPPYSGNAVG GGGGYGSNFG
201: GGGGYGVAGG VGGSENFAQG SSTNAGFDDK FESNQPLGND TDHQTESGLG GDEQFGGSDN QFGDAENGNT ENGPVGFDQT DDGDVAKRA

Arabidopsis Description

RBG5Glycine-rich RNA-binding protein 5, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9C909]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.