Factsheet for Bra028739.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
nucleus 1
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY04982	Canola	mitochondrion	97.95	97.95
CDY14089	Canola	mitochondrion	95.21	95.21
AT5G06210.1	Thale cress	mitochondrion	78.77	78.77
PGSC0003DMT400072597	Potato	mitochondrion	58.22	65.89
VIT_08s0007g02860.t01	Wine grape	mitochondrion	59.59	65.41
Solyc10g083240.1.1	Tomato	mitochondrion	57.53	65.12
KRH67959	Soybean	mitochondrion	54.11	60.77
EES10764	Sorghum	mitochondrion	47.26	51.11
TraesCS2D01G294000.1	Wheat	mitochondrion	47.26	49.64
TraesCS2B01G312500.1	Wheat	mitochondrion	46.58	48.92
TraesCS2A01G296100.1	Wheat	mitochondrion	46.58	48.92
Os04t0414300-00	Rice	mitochondrion	45.21	48.18
HORVU2Hr1G073330.9	Barley	cytosol, nucleus	41.78	44.85
Bra020279.1-P	Field mustard	mitochondrion	29.45	39.09
Bra002976.1-P	Field mustard	mitochondrion	27.4	38.46
Bra000516.1-P	Field mustard	mitochondrion	33.56	36.57
Bra005189.1-P	Field mustard	plastid	32.88	33.33
Bra029020.1-P	Field mustard	plastid	32.88	31.37
Bra029692.1-P	Field mustard	mitochondrion	28.77	29.37
Bra037056.1-P	Field mustard	mitochondrion	30.14	29.33
Bra013997.1-P	Field mustard	mitochondrion	28.77	28.97
Bra025674.1-P	Field mustard	mitochondrion	26.71	26.9
Bra008100.1-P	Field mustard	cytosol	15.07	26.83
Bra001972.1-P	Field mustard	nucleus	26.03	23.17
Bra011869.1-P	Field mustard	cytosol	23.97	21.6
Bra030284.1-P	Field mustard	nucleus	24.66	21.43
Bra031210.1-P	Field mustard	nucleus	24.66	21.43
Bra010693.1-P	Field mustard	nucleus	23.97	21.21
Bra008020.1-P	Field mustard	endoplasmic reticulum	28.77	20.19
Bra008142.1-P	Field mustard	mitochondrion	35.62	19.7
Bra014000.1-P	Field mustard	mitochondrion	29.45	19.37
Bra015926.1-P	Field mustard	mitochondrion	34.93	17.89
Bra035944.1-P	Field mustard	plastid	30.82	17.11
Bra025205.1-P	Field mustard	nucleus	25.34	15.95
Bra032933.1-P	Field mustard	nucleus	26.03	15.64
Bra003841.1-P	Field mustard	cytosol, nucleus, plastid	26.03	14.79
Bra012986.1-P	Field mustard	mitochondrion	30.14	14.43
Bra031244.1-P	Field mustard	plastid	30.14	11.8
Bra005798.1-P	Field mustard	nucleus	22.6	10.78

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.1	EnsemblPlantsGene:Bra028739	EnsemblPlants:Bra028739.1	EnsemblPlants:Bra028739.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006950	GO:GO:0008150	GO:GO:0009507	GO:GO:0009536	GO:GO:0009628
GO:GO:1901002	InterPro:IPR000504	InterPro:IPR012677	UniProt:M4EIX4	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
PFscan:PS50102	PANTHER:PTHR45502	PANTHER:PTHR45502:SF1	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360
SUPFAM:SSF54928	UniParc:UPI000254317A	SEG:seg	:	:	:

Description

AT5G06210 (E=3e-050) | RNA-binding protein, putative

Coordinates

chrA02:+:2292574..2293325

Molecular Weight (calculated)

15421.4 Da

IEP (calculated)

9.210

GRAVY (calculated)

-0.117

Length

146 amino acids

Sequence
(BLAST)

001: MAALARIGGR YLKSVGVTKA SSSCFLTQRR GVATKLFVGG LSFYTTEEGL SEAFSQCGQV VEAQIVMDRV SDRSKGFGFV TFASDDDARK ALMEFNGQQL
101: NGRVIFVDYA KAKQTFGGGG GGLPIARGPP RPGEAAATTS EPLNIE

Best Arabidopsis Sequence Match ( AT5G06210.1 )
(BLAST)

001: MAALARIGGR HLKSVCLINS SASCFFTQRR GVASKLFIGG LSFCTTEQGL SEAFSKCGQV VEAQIVMDRV SDRSKGFGFV TFASADEAQK ALMEFNGQQL
101: NGRTIFVDYA KAKQSLGGGG GYPIARGPPD PAVIAATRTT ETSKSD

Arabidopsis Description

S-RBP11Small RNA-binding protein 11, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FFZ6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.