Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 6
- nucleus 1
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os01t0218200-00 | |
| Os05t0210600-01 | |
| Os05t0587300-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G27330.1 | Os01t0218200-00 | AT2G42580.1 | 19000166 |
| AT2G27330.1 | Os05t0210600-01 | AT2G42580.1 | 19000166 |
| AT2G27330.1 | Os05t0587300-01 | AT2G42580.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G294000.1 | Wheat | mitochondrion | 77.37 | 76.26 |
| TraesCS2A01G296100.1 | Wheat | mitochondrion | 77.37 | 76.26 |
| EES10764 | Sorghum | mitochondrion | 74.45 | 75.56 |
| TraesCS2B01G312500.1 | Wheat | mitochondrion | 76.64 | 75.54 |
| HORVU2Hr1G073330.9 | Barley | cytosol, nucleus | 59.85 | 60.29 |
| Os01t0502800-01 | Rice | mitochondrion | 20.44 | 52.83 |
| Solyc10g083240.1.1 | Tomato | mitochondrion | 48.91 | 51.94 |
| PGSC0003DMT400072597 | Potato | mitochondrion | 48.91 | 51.94 |
| KRH67959 | Soybean | mitochondrion | 48.91 | 51.54 |
| VIT_08s0007g02860.t01 | Wine grape | mitochondrion | 49.63 | 51.13 |
| GSMUA_Achr6P35640_001 | Banana | nucleus | 46.72 | 46.04 |
| KRH27720 | Soybean | endoplasmic reticulum, mitochondrion | 32.12 | 45.36 |
| Bra028739.1-P | Field mustard | mitochondrion | 48.18 | 45.21 |
| CDY04982 | Canola | mitochondrion | 48.18 | 45.21 |
| VIT_06s0080g00870.t01 | Wine grape | plastid | 35.77 | 44.14 |
| AT5G06210.1 | Thale cress | mitochondrion | 46.72 | 43.84 |
| CDY14089 | Canola | mitochondrion | 46.72 | 43.84 |
| KRH77758 | Soybean | mitochondrion | 35.77 | 43.36 |
| AT2G27330.1 | Thale cress | mitochondrion | 33.58 | 39.66 |
| CDY31170 | Canola | mitochondrion, nucleus | 32.85 | 34.09 |
| Os07t0549800-01 | Rice | mitochondrion | 32.12 | 33.08 |
| Bra000516.1-P | Field mustard | mitochondrion | 32.12 | 32.84 |
| CDX83260 | Canola | mitochondrion | 32.12 | 32.84 |
| Os08t0139000-02 | Rice | mitochondrion | 33.58 | 32.62 |
| Os01t0974701-01 | Rice | mitochondrion | 26.28 | 31.03 |
| Os01t0916600-01 | Rice | mitochondrion | 32.12 | 29.33 |
| Os03t0278800-00 | Rice | plastid | 34.31 | 27.17 |
| Os12t0632000-01 | Rice | nucleus | 28.47 | 24.07 |
| Os03t0670700-01 | Rice | nucleus | 27.74 | 19.39 |
| Os03t0836200-03 | Rice | nucleus | 28.47 | 19.02 |
| Os04t0583800-01 | Rice | plastid | 16.06 | 18.64 |
| Os07t0602600-01 | Rice | mitochondrion | 31.39 | 18.07 |
| Os12t0502200-01 | Rice | mitochondrion | 33.58 | 17.83 |
| Os03t0681900-01 | Rice | nucleus | 28.47 | 12.66 |
| Os10t0321700-01 | Rice | mitochondrion | 28.47 | 12.3 |
| Os02t0730800-01 | Rice | plastid | 29.93 | 10.28 |
Protein Annotations
| EnsemblPlants:Os04t0414300-00 | EnsemblPlantsGene:Os04g0414300 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| PANTHER:PTHR45502 | PANTHER:PTHR45502:SF1 | PFAM:PF00076 | PFscan:PS50102 | ProteinID:BAS89144.1 | SEG:seg |
| SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI000393A38A | UniProt:A0A0P0WAK6 | MapMan:35.1 | : |
Description
Similar to H0622F05.1 protein. (Os04t0414300-00)
Coordinates
chr4:+:20484148..20485191
Molecular Weight (calculated)
15075.1 Da
IEP (calculated)
10.504
GRAVY (calculated)
-0.453
Length
137 amino acids
Sequence
(BLAST)
(BLAST)
001: MAMAALREAS RRLVSRRESP AAYARPFLLT HSRGITYRLF IGGLSQFATE DSLAEAFSQY GQVLEATIVT DKMTNRPKGF GFVKFASEEA ANKAKEEMNG
101: KALNGRVIYV DIAKAKMNRT TDSSPRATGP PKPPDRC
101: KALNGRVIYV DIAKAKMNRT TDSSPRATGP PKPPDRC
001: MAALARIGGR HLKSVCLINS SASCFFTQRR GVASKLFIGG LSFCTTEQGL SEAFSKCGQV VEAQIVMDRV SDRSKGFGFV TFASADEAQK ALMEFNGQQL
101: NGRTIFVDYA KAKQSLGGGG GYPIARGPPD PAVIAATRTT ETSKSD
101: NGRTIFVDYA KAKQSLGGGG GYPIARGPPD PAVIAATRTT ETSKSD
Arabidopsis Description
S-RBP11Small RNA-binding protein 11, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FFZ6]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.