Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| mitochondrion:
15069638
nucleus: 18022940 nucleus: 18203134 nucleus: 19621931 plastid: 21433289 |
msms PMID:
18022940
doi
Department of Biochemistry and Molecular Biology, Mississippi State University, Mississippi State, MS 39762, USA.
msms PMID:
18203134
doi
Department of Biochemistry and Molecular Biology, Mississippi State University, Mississippi State, MS 39762, USA.
msms PMID:
15069638
doi
Department of Molecular Genetics, National Institute of Agrobiological Sciences, 305-8602, Tsukuba, Japan.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc10g051390.1.1 | Tomato | nucleus | 47.45 | 78.81 |
| Os12t0632000-01 | Rice | nucleus | 62.24 | 75.31 |
| Zm00001d041246_P001 | Maize | nucleus | 53.06 | 71.72 |
| Zm00001d013568_P001 | Maize | extracellular, mitochondrion, plasma membrane, plastid | 56.63 | 69.81 |
| Zm00001d031168_P001 | Maize | plastid | 54.08 | 68.39 |
| GSMUA_Achr7P27650_001 | Banana | nucleus | 45.92 | 67.67 |
| EES16438 | Sorghum | nucleus | 56.63 | 67.27 |
| Solyc10g051380.1.1 | Tomato | nucleus | 43.88 | 66.15 |
| GSMUA_Achr4P14550_001 | Banana | nucleus | 52.55 | 65.19 |
| KXG37870 | Sorghum | nucleus | 56.12 | 64.71 |
| CDY59763 | Canola | nucleus | 54.59 | 64.07 |
| Bra031210.1-P | Field mustard | nucleus | 54.59 | 63.69 |
| CDY70933 | Canola | nucleus | 54.59 | 63.69 |
| CDY72366 | Canola | nucleus | 54.59 | 62.57 |
| Bra030284.1-P | Field mustard | nucleus | 53.06 | 61.9 |
| VIT_03s0063g02610.t01 | Wine grape | nucleus | 51.02 | 61.73 |
| CDY15876 | Canola | nucleus | 53.06 | 61.54 |
| GSMUA_Achr8P05200_001 | Banana | cytosol | 48.47 | 61.29 |
| GSMUA_Achr3P30570_001 | Banana | plasma membrane | 53.06 | 61.18 |
| KRH29452 | Soybean | nucleus | 47.96 | 60.26 |
| PGSC0003DMT400084266 | Potato | extracellular | 49.49 | 60.25 |
| KRH29453 | Soybean | nucleus | 42.86 | 60.0 |
| CDY46213 | Canola | nucleus | 37.24 | 59.84 |
| KRH29451 | Soybean | nucleus | 52.04 | 59.65 |
| CDY12133 | Canola | cytosol | 46.94 | 58.23 |
| CDX90323 | Canola | plastid | 48.98 | 58.18 |
| Bra010693.1-P | Field mustard | nucleus | 48.98 | 58.18 |
| Bra011869.1-P | Field mustard | cytosol | 47.96 | 58.02 |
| CDY42616 | Canola | cytosol | 46.43 | 57.96 |
| AT2G21660.1 | Thale cress | nucleus | 52.04 | 57.95 |
| Bra001972.1-P | Field mustard | nucleus | 48.47 | 57.93 |
| AT4G39260.1 | Thale cress | nucleus | 49.49 | 57.4 |
| CDY41969 | Canola | cytosol | 37.24 | 57.03 |
| PGSC0003DMT400001879 | Potato | cytosol | 50.51 | 56.25 |
| Solyc01g109660.2.1 | Tomato | extracellular | 49.49 | 55.43 |
| PGSC0003DMT400084290 | Potato | nucleus | 46.94 | 55.42 |
| PGSC0003DMT400084258 | Potato | nucleus | 46.94 | 55.42 |
| PGSC0003DMT400083014 | Potato | nucleus | 46.94 | 55.42 |
| KRH29454 | Soybean | nucleus | 47.96 | 55.29 |
| CDX71276 | Canola | nucleus | 48.47 | 55.23 |
| KRH51528 | Soybean | nucleus | 50.0 | 53.85 |
| KRH60842 | Soybean | mitochondrion | 48.47 | 51.35 |
| HORVU5Hr1G089190.1 | Barley | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 23.98 | 47.47 |
| Os01t0502800-01 | Rice | mitochondrion | 10.2 | 37.74 |
| Os01t0916600-01 | Rice | mitochondrion | 26.53 | 34.67 |
| Os03t0836200-03 | Rice | nucleus | 34.18 | 32.68 |
| Os01t0974701-01 | Rice | mitochondrion | 16.84 | 28.45 |
| Os04t0414300-00 | Rice | mitochondrion | 19.39 | 27.74 |
| Os12t0502200-01 | Rice | mitochondrion | 34.18 | 25.97 |
| Os07t0602600-01 | Rice | mitochondrion | 30.61 | 25.21 |
| Os07t0549800-01 | Rice | mitochondrion | 16.84 | 24.81 |
| Os08t0139000-02 | Rice | mitochondrion | 16.33 | 22.7 |
| Os10t0321700-01 | Rice | mitochondrion | 32.65 | 20.19 |
| Os03t0681900-01 | Rice | nucleus | 31.63 | 20.13 |
| Os03t0278800-00 | Rice | plastid | 17.35 | 19.65 |
| Os04t0583800-01 | Rice | plastid | 6.12 | 10.17 |
| Os02t0730800-01 | Rice | plastid | 17.86 | 8.77 |
Protein Annotations
| MapMan:16.7.2 | Gene3D:3.30.70.330 | EntrezGene:4333690 | ProteinID:AAT85299.1 | ProteinID:ABF98115.1 | ProteinID:ABF98116.1 |
| EMBL:AK070016 | ProteinID:BAF12784.1 | ProteinID:BAS85683.1 | ProteinID:BAS85685.1 | ProteinID:BAS85686.1 | EMBL:EF434401 |
| EMBL:EU267963 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 | GO:GO:0005488 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016301 | GO:GO:0016310 | GO:GO:0016740 |
| EMBL:GQ848033 | InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | EnsemblPlantsGene:Os03g0670700 | EnsemblPlants:Os03t0670700-01 |
| PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR44993 | UniProt:Q10FE7 | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI0000DB4E7C | RefSeq:XP_015630902.1 | SEG:seg | : |
Description
GLYCINE-RICH RNA-BINDING PROTEIN 3Similar to Glycine-rich RNA-binding, abscisic acid-inducible protein. (Os03t0670700-01);Similar to Glycine-rich protein. (Os03t0670700-02);Similar to Glycine rich RNA binding protein. (Os03t0670700-03);Similar to Glycine-rich protein. (Os03t0670700-04)
Coordinates
chr3:+:26460057..26461142
Molecular Weight (calculated)
20376.6 Da
IEP (calculated)
7.339
GRAVY (calculated)
-0.445
Length
196 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAPDVEYRC FVGGLAWATD DRSLEAAFST YGEILDSKII NDRETGRSRG FGFVTFSSEQ SMRDAIEGMN GKELDGRNIT VNEAQSRRSG GGGGGYGGGG
101: GGYGGGRGGG GYGGGGGGGY GRREGGYAVA AATAATPAGT GGTDWWGPSW PVILSYPCQN HLIIESSRYR VQWLSRVEKP SIHPSSVRCS SSVMLP
101: GGYGGGRGGG GYGGGGGGGY GRREGGYAVA AATAATPAGT GGTDWWGPSW PVILSYPCQN HLIIESSRYR VQWLSRVEKP SIHPSSVRCS SSVMLP
001: MASGDVEYRC FVGGLAWATD DRALETAFAQ YGDVIDSKII NDRETGRSRG FGFVTFKDEK AMKDAIEGMN GQDLDGRSIT VNEAQSRGSG GGGGHRGGGG
101: GGYRSGGGGG YSGGGGSYGG GGGRREGGGG YSGGGGGYSS RGGGGGSYGG GRREGGGGYG GGEGGGYGGS GGGGGW
101: GGYRSGGGGG YSGGGGSYGG GGGRREGGGG YSGGGGGYSS RGGGGGSYGG GRREGGGGYG GGEGGGYGGS GGGGGW
Arabidopsis Description
RBG7Glycine-rich RNA-binding protein 7 [Source:UniProtKB/Swiss-Prot;Acc:Q03250]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.