Factsheet for Os03t0681900-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 18022940
nucleus: 19621931
nucleus: 23303719
nucleus: 23777608
nucleus: 26035336
plastid: 27992503

msms PMID: 18022940 doi

F Tan, G Li, BR Chitteti, Z Peng

Department of Biochemistry and Molecular Biology, Mississippi State University, Mississippi State, MS 39762, USA.

msms PMID: 23777608 doi

H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.

msms PMID: 26035336 doi

M Li, X Yin, K Sakata, P Yang, S Komatsu

§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.

msms PMID: 23303719 doi

Q He, L Chen, Y Xu, W Yu

State Key Laboratory for Agrobiotechnology, Institute of Plant Molecular Biology and Agricultural Biotechnology, School of Life Sciences, The Chinese University of Hong Kong, Shatin, Hong Kong.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0252100-02
Os03t0681900-01
Os11t0704700-01
Os12t0572400-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G04280.1	Os02t0252100-02	AT3G55460.1	21798944
AT5G04280.1	Os11t0704700-01	AT3G55460.1	21798944
AT5G04280.1	Os12t0572400-01	AT3G55460.1	21798944
AT5G04280.1	Os03t0681900-01	AT5G04280.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG37841	Sorghum	nucleus	85.39	83.23
Zm00001d013543_P009	Maize	extracellular, mitochondrion, plasma membrane	83.44	82.64
Zm00001d033511_P002	Maize	cytosol, mitochondrion, nucleus	79.22	82.15
TraesCS4D01G023800.2	Wheat	nucleus	83.44	80.82
TraesCS4A01G288500.1	Wheat	nucleus	82.79	80.44
TraesCS4B01G026400.1	Wheat	nucleus	83.12	80.25
GSMUA_Achr4P22370_001	Banana	nucleus	66.23	65.59
GSMUA_Achr2P12550_001	Banana	nucleus	44.48	61.16
VIT_13s0019g05080.t01	Wine grape	nucleus	51.95	57.55
KRG90774	Soybean	nucleus	51.3	56.63
PGSC0003DMT400043581	Potato	nucleus	48.05	54.61
KRH35987	Soybean	nucleus	45.13	48.1
Solyc03g071560.2.1	Tomato	nucleus	49.03	48.09
CDY11283	Canola	nucleus	47.08	47.39
Bra005798.1-P	Field mustard	nucleus	47.08	47.39
VIT_08s0007g04870.t01	Wine grape	cytosol	37.99	47.18
GSMUA_Achr4P28550_001	Banana	cytosol, mitochondrion, nucleus	51.62	46.09
AT5G04280.1	Thale cress	cytosol, nucleus, plastid	46.1	45.81
CDY34132	Canola	nucleus	37.66	45.49
CDX80910	Canola	nucleus	38.31	45.21
AT1G60650.2	Thale cress	nucleus	42.53	44.86
PGSC0003DMT400079815	Potato	nucleus	45.45	44.03
Os12t0632000-01	Rice	nucleus	23.05	43.83
Solyc11g008210.1.1	Tomato	nucleus	40.91	42.71
Os03t0836200-03	Rice	nucleus	27.92	41.95
Os01t0502800-01	Rice	mitochondrion	6.17	35.85
Os01t0916600-01	Rice	mitochondrion	15.58	32.0
Os03t0670700-01	Rice	nucleus	20.13	31.63
Os04t0414300-00	Rice	mitochondrion	12.66	28.47
Os12t0502200-01	Rice	mitochondrion	21.43	25.58
Os07t0549800-01	Rice	mitochondrion	10.39	24.06
Os08t0139000-02	Rice	mitochondrion	10.71	23.4
Os01t0974701-01	Rice	mitochondrion	8.12	21.55
Os07t0602600-01	Rice	mitochondrion	16.56	21.43
Os10t0321700-01	Rice	mitochondrion	21.75	21.14
Os03t0278800-00	Rice	plastid	11.69	20.81
Os04t0583800-01	Rice	plastid	4.87	12.71
Os02t0730800-01	Rice	plastid	11.36	8.77

Protein Annotations

MapMan:16.7.2	Gene3D:3.30.70.330	Gene3D:4.10.60.10	EntrezGene:4333731	ProteinID:AAP68379.1	ProteinID:ABF98222.1
EMBL:AK061750	EMBL:AK062094	ProteinID:BAF12823.1	ProteinID:BAS85768.1	ProteinID:EEE59701.1	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0008270	InterPro:IPR000504	InterPro:IPR001878
InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	EnsemblPlantsGene:Os03g0681900	EnsemblPlants:Os03t0681900-01	PFAM:PF00076	PFAM:PF00098
PFscan:PS50102	PFscan:PS50158	PANTHER:PTHR44993	PANTHER:PTHR44993:SF2	UniProt:Q7Y008	InterPro:RBD_domain_sf
InterPro:RRM_dom	SMART:SM00343	SMART:SM00360	SUPFAM:SSF54928	SUPFAM:SSF57756	UniParc:UPI00001A96DB
RefSeq:XP_015632520.1	InterPro:Znf_CCHC	InterPro:Znf_CCHC_sf	SEG:seg	:	:

Description

zinc finger-containing glycine-rich RNA-binding protein 3Similar to RGP-3 (Fragment). (Os03t0681900-01)

Coordinates

chr3:-:27134606..27138691

Molecular Weight (calculated)

34038.5 Da

IEP (calculated)

9.099

GRAVY (calculated)

-1.357

Length

308 amino acids

Sequence
(BLAST)

001: MAGKEEGRIF VGGLSFHTDE RKLADAFRRF GKVVDAQIML ERHTQRHRGF GFVTFSDPEA VDSAIKEMHC QELDGRTISV NKAEPKMNTD DTRYESGGGR
101: GEYRGGRGDG PPPGNCFECG RAGHWARDCP NPGGGRSARY SSSKFSAGGR GDRFSGSDRF GDRYMDDRYD GGYREPVDVR DRYGGGRDRY ANDRYPSGGD
201: RYVPDRYGGP DRYQPSSYGR ERERSYERDG VRGNGGYDRS GPRGGGSYDR DGPRGGISGG YDRDGPRGGG VDRYGGGGPA RYDGGSYRDR SGPYDRPSRG
301: GRFDDRFQ

Best Arabidopsis Sequence Match ( AT5G04280.1 )
(BLAST)

001: MAAKEGSRIF VGGLSPEVTD RDLERAFSRF GDILDCQIML ERDTGRSRGF GFITFADRRA MDESIREMHG RDFGDRVISV NRAEPKLGRD DGESHGSRGG
101: RDSGYSIAGK GSFGGGGGGG GRVGEDECFK CGRVGHWARD CPSAGGGRGG PVGGFSSRAS AYGGSDGRVD RYADRDRYVD RERYIDDRYD GAARYGARDR
201: FDSREAYIPR DRYASDRYAA PADRFAGGDR YSRGSDRYPP GSYDKARSFE RDIAPSAGSD RYGGGRAGGP IRGGGEEGRG FRSRAGAPYE RPSRSGGGGA
301: YPSSSTFDRY

Arabidopsis Description

RZ1CGlycine-rich RNA-binding protein RZ1C [Source:UniProtKB/Swiss-Prot;Acc:Q8RWN5]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.