Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 8
- nucleus 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG26990 | Sorghum | plastid | 46.61 | 37.41 |
| Zm00001d026016_P002 | Maize | plastid | 45.76 | 36.0 |
| VIT_17s0053g00760.t01 | Wine grape | plastid | 34.75 | 25.79 |
| GSMUA_Achr5P15860_001 | Banana | plastid | 33.9 | 23.53 |
| CDX82066 | Canola | cytosol, nucleus, plastid | 17.8 | 21.88 |
| KRH09475 | Soybean | plastid | 31.36 | 20.56 |
| Solyc09g011210.2.1 | Tomato | plastid | 22.03 | 19.7 |
| PGSC0003DMT400022733 | Potato | plastid | 26.27 | 19.02 |
| AT1G73530.1 | Thale cress | plastid | 28.81 | 18.78 |
| Os07t0549800-01 | Rice | mitochondrion | 19.49 | 17.29 |
| Os03t0278800-00 | Rice | plastid | 23.73 | 16.18 |
| Os04t0414300-00 | Rice | mitochondrion | 18.64 | 16.06 |
| Os01t0916600-01 | Rice | mitochondrion | 19.49 | 15.33 |
| Bra003841.1-P | Field mustard | cytosol, nucleus, plastid | 32.2 | 14.79 |
| Os08t0139000-02 | Rice | mitochondrion | 16.95 | 14.18 |
| Os01t0974701-01 | Rice | mitochondrion | 11.86 | 12.07 |
| KRH38934 | Soybean | plastid | 13.56 | 10.39 |
| Os07t0602600-01 | Rice | mitochondrion | 19.49 | 9.66 |
| Os12t0632000-01 | Rice | nucleus | 11.86 | 8.64 |
| Os12t0502200-01 | Rice | mitochondrion | 18.64 | 8.53 |
| Os03t0836200-03 | Rice | nucleus | 13.56 | 7.8 |
| Os03t0670700-01 | Rice | nucleus | 10.17 | 6.12 |
| Os02t0730800-01 | Rice | plastid | 20.34 | 6.02 |
| Os01t0502800-01 | Rice | mitochondrion | 2.54 | 5.66 |
| Os10t0321700-01 | Rice | mitochondrion | 14.41 | 5.36 |
| Os03t0681900-01 | Rice | nucleus | 12.71 | 4.87 |
| Bra008100.1-P | Field mustard | cytosol | 2.54 | 3.66 |
Protein Annotations
| EnsemblPlants:Os04t0583800-01 | EnsemblPlantsGene:Os04g0583800 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | ProteinID:BAH92794.1 | ProteinID:BAS90676.1 |
| SEG:seg | SUPFAM:SSF54928 | UniParc:UPI0001B66178 | UniProt:C7J1S2 | MapMan:35.2 | : |
Description
RNA-binding region RNP-1 (RNA recognition motif) domain containing protein. (Os04t0583800-01)
Coordinates
chr4:+:29499367..29500598
Molecular Weight (calculated)
12269.4 Da
IEP (calculated)
10.409
GRAVY (calculated)
-0.193
Length
118 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGARAAVIP VAAPPRTISV SLAASPSSSH PLRPVASSGV SCSQRRLPTA AAARNHPPPS ASHGAASRLY VSGLSFRTTE ESLRNAFERF GQLTEGGVDQ
101: CHGTKIVIQS FDSENSWA
101: CHGTKIVIQS FDSENSWA
001: MAISLGRVVV PSCTISGDRL FIPNFSAICS VSCGRINVGT GVISARRRRD IGGVLISSCL STDSSSSPPS SSSGPKTKLY VSGLSFRTTE DTLRDTFEQF
101: GNLIHMNMVM DKVANRPKGF AFLRYETEEE AMKAIQGMHG KFLDGRVIFV EEAKTRSDMS RAKPRRDFPK PQSKPRTFRT W
101: GNLIHMNMVM DKVANRPKGF AFLRYETEEE AMKAIQGMHG KFLDGRVIFV EEAKTRSDMS RAKPRRDFPK PQSKPRTFRT W
Arabidopsis Description
ORRM6Organelle RRM domain-containing protein 6, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FX45]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.