Factsheet for Os12t0502200-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 7
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

mitochondrion: 23257241
nucleus: 23257241

mitochondrion: 19010998
mitochondrion: 23027867
nucleus: 26035336

gfp PMID: 23257241 doi

L Xu, C Carrie, SR Law, MW Murcha, J Whelan

Australian Research Council Centre of Excellence in Plant Energy Biology, University of Western Australia, Crawley, Western Australia 6009, Australia.

msms PMID: 23027867 doi

G Liu, H Tian, YQ Huang, J Hu, YX Ji, SQ Li, YQ Feng, L Guo, YG Zhu

State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan 430072, China.

msms PMID: 26035336 doi

M Li, X Yin, K Sakata, P Yang, S Komatsu

§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.

msms PMID: 19010998 doi

S Huang, NL Taylor, R Narsai, H Eubel, J Whelan, AH Millar

Australian Research Council Centre of Excellence in Plant Energy Biology, M316, University of Western Australia, Crawley, 6009 Western Australia, Australia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G428400.1	Wheat	mitochondrion	61.63	70.35
TraesCS3D01G424100.1	Wheat	mitochondrion	59.69	70.32
EES16016	Sorghum	mitochondrion	66.67	68.8
Zm00001d041750_P001	Maize	mitochondrion	67.05	66.28
TraesCS3B01G465800.1	Wheat	mitochondrion	58.91	65.8
Zm00001d023734_P003	Maize	nucleus, plastid	69.77	62.72
GSMUA_Achr4P03230_001	Banana	mitochondrion	56.2	56.64
GSMUA_Achr9P07090_001	Banana	mitochondrion	51.16	55.46
HORVU3Hr1G094330.2	Barley	mitochondrion	64.34	54.25
Os01t0916600-01	Rice	mitochondrion	31.4	54.0
VIT_17s0000g07330.t01	Wine grape	plastid	53.88	50.18
KRH01278	Soybean	mitochondrion, nucleus, plastid	46.12	48.77
Solyc02g066930.2.1	Tomato	nucleus	39.53	47.22
PGSC0003DMT400064758	Potato	mitochondrion	45.74	47.01
KRH45033	Soybean	nucleus, plastid	44.57	46.94
KRH03133	Soybean	nucleus	50.0	46.91
Os12t0632000-01	Rice	nucleus	29.07	46.3
KRH56813	Soybean	mitochondrion	48.45	45.62
Os07t0602600-01	Rice	mitochondrion	41.09	44.54
AT5G61030.1	Thale cress	mitochondrion	53.1	44.34
Bra035944.1-P	Field mustard	plastid	44.96	44.11
CDY16825	Canola	plastid	44.57	43.73
Os01t0502800-01	Rice	mitochondrion	8.91	43.4
Os10t0321700-01	Rice	mitochondrion	53.1	43.22
Bra012986.1-P	Field mustard	mitochondrion	50.78	42.95
PGSC0003DMT400003685	Potato	nucleus	45.35	38.61
CDY02175	Canola	mitochondrion	50.0	38.05
Os07t0549800-01	Rice	mitochondrion	18.99	36.84
CDX87197	Canola	plastid	45.35	35.56
Solyc02g088790.2.1	Tomato	extracellular, plastid	50.0	34.58
Os03t0670700-01	Rice	nucleus	25.97	34.18
Os04t0414300-00	Rice	mitochondrion	17.83	33.58
Os01t0974701-01	Rice	mitochondrion	14.73	32.76
Os03t0836200-03	Rice	nucleus	23.64	29.76
Os08t0139000-02	Rice	mitochondrion	15.89	29.08
Os03t0278800-00	Rice	plastid	18.22	27.17
Os03t0681900-01	Rice	nucleus	25.58	21.43
Os04t0583800-01	Rice	plastid	8.53	18.64
KRH54698	Soybean	plastid	48.06	18.4
Os02t0730800-01	Rice	plastid	14.73	9.52

Protein Annotations

MapMan:16.12.5.2	Gene3D:3.30.70.330	EntrezGene:4352279	ProteinID:ABA98638.1	EMBL:AK064923	EMBL:AK099309
ProteinID:BAF29846.1	ProteinID:BAT17260.1	ProteinID:EAZ20586.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	EnsemblPlantsGene:Os12g0502200	EnsemblPlants:Os12t0502200-01
PFAM:PF00076	PRINTS:PR01228	PFscan:PS50102	PANTHER:PTHR44202	UniProt:Q2QQ97	InterPro:RBD_domain_sf
InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0000681046	RefSeq:XP_015619866.1	SEG:seg

Description

GLYCINE-RICH RNA-BINDING PROTEIN 6Similar to Low temperature-responsive RNA-binding protein. (Os12t0502200-01)

Coordinates

chr12:+:19129927..19133740

Molecular Weight (calculated)

25046.1 Da

IEP (calculated)

4.508

GRAVY (calculated)

-0.592

Length

258 amino acids

Sequence
(BLAST)

001: MALANKIGNL LKRATSSSPA LYQSIRCMSS SKLFVGGLSY GTDEQSLRDT FANYGQVIEA KIINDRETGR SRGFGFITYA SSEEASAAIT ALDGKDLDGR
101: NIRVNTANER TGGFRSGGGG YGGGGYGGGG GGYGGGGYSG GGGYGGGGYS GGGGGGGGYQ GGGGGYGGNN GGYGNRGGGG GGYGVAEGSA DAFSGINLGG
201: DGSFGGNPAG SFGDAGGSTG GGDFSGAGGD SFGSRKNDEL MDDLFKDDEP DNYANKQG

Best Arabidopsis Sequence Match ( AT5G61030.2 )
(BLAST)

001: MAFLSKFGNI LKQTTNKQLN AQVSLSSPSL FQAIRCMSSS KLFIGGMAYS MDEDSLREAF TKYGEVVDTR VILDRETGRS RGFGFVTFTS SEAASSAIQA
101: LDGRDLHGRV VKVNYANDRT SGGGFGGGGY GGGGGGYGGS GGYGGGAGGY GGSGGYGGGA GGYGGNSGGG YGGNAAGGYG GSGAGGYGGD ATGHGGAGGG
201: YGSSGGFGSS GNTYGEGSSA SAGAVGDYNG SSGYGSANTY GSSNGGFAGD SQFGGSPVGN SSQFGGDNTQ FTAGGQFGGE DQFGSMEKSE TKMEDGPIGG
301: EFEDVAKRA

Arabidopsis Description

RBG3GR-RBP3 [Source:UniProtKB/TrEMBL;Acc:A0A178UBT5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.