Factsheet for VIT_17s0000g07330.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 3
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_05s0029g00440.t01	Wine grape	mitochondrion, nucleus, plastid	31.77	57.89
GSMUA_Achr9P07090_001	Banana	mitochondrion	48.01	55.88
Os12t0502200-01	Rice	mitochondrion	50.18	53.88
EES16016	Sorghum	mitochondrion	48.38	53.6
GSMUA_Achr4P03230_001	Banana	mitochondrion	48.74	52.73
Bra035944.1-P	Field mustard	plastid	49.82	52.47
Solyc02g066930.2.1	Tomato	nucleus	40.79	52.31
CDY16825	Canola	plastid	49.46	52.09
PGSC0003DMT400064758	Potato	mitochondrion	46.21	51.0
KRH03133	Soybean	nucleus	50.54	50.91
TraesCS3A01G428400.1	Wheat	mitochondrion	41.16	50.44
TraesCS3D01G424100.1	Wheat	mitochondrion	39.71	50.23
Zm00001d041750_P001	Maize	mitochondrion	47.29	50.19
AT5G61030.1	Thale cress	mitochondrion	55.96	50.16
TraesCS3B01G465800.1	Wheat	mitochondrion	41.52	49.78
Bra012986.1-P	Field mustard	mitochondrion	54.51	49.51
KRH56813	Soybean	mitochondrion	48.38	48.91
Zm00001d023734_P003	Maize	nucleus, plastid	50.18	48.43
Os07t0602600-01	Rice	mitochondrion	41.52	48.32
VIT_03s0063g02610.t01	Wine grape	nucleus	27.44	46.91
Os10t0321700-01	Rice	mitochondrion	52.35	45.74
HORVU5Hr1G110370.1	Barley	mitochondrion	47.65	45.05
CDY02175	Canola	mitochondrion	53.79	43.95
TraesCS5D01G473100.1	Wheat	mitochondrion	48.38	43.79
TraesCS5A01G460900.1	Wheat	mitochondrion	47.29	42.95
TraesCS5B01G470700.1	Wheat	mitochondrion	47.29	42.67
CDX87197	Canola	plastid	49.82	41.95
PGSC0003DMT400003685	Potato	nucleus	45.85	41.91
HORVU3Hr1G094330.2	Barley	mitochondrion	45.13	40.85
TraesCS2B01G203200.1	Wheat	mitochondrion	46.93	40.75
TraesCS2D01G184200.1	Wheat	mitochondrion	46.93	40.0
VIT_08s0007g02860.t01	Wine grape	mitochondrion	18.77	39.1
Solyc02g088790.2.1	Tomato	extracellular, plastid	52.35	38.87
Zm00001d022065_P001	Maize	mitochondrion	42.6	38.31
KXG36643	Sorghum	mitochondrion	42.24	37.03
VIT_06s0080g00870.t01	Wine grape	plastid	14.8	36.94
VIT_05s0094g00380.t01	Wine grape	mitochondrion	14.44	36.36
VIT_12s0059g01210.t01	Wine grape	mitochondrion	16.61	32.86
VIT_08s0040g03330.t01	Wine grape	plastid	16.61	32.86
VIT_19s0014g04770.t01	Wine grape	mitochondrion	15.88	32.59
VIT_06s0004g04260.t01	Wine grape	mitochondrion	11.91	31.13
VIT_08s0007g00070.t01	Wine grape	mitochondrion	13.36	27.82
VIT_18s0166g00180.t01	Wine grape	mitochondrion	24.55	23.86
VIT_08s0007g04870.t01	Wine grape	cytosol	20.94	23.39
VIT_13s0019g05080.t01	Wine grape	nucleus	23.47	23.38
KRH54698	Soybean	plastid	46.57	19.14
VIT_17s0053g00760.t01	Wine grape	plastid	10.47	18.24
TraesCS2A01G176700.1	Wheat	mitochondrion	44.04	16.64
VIT_13s0106g00500.t01	Wine grape	plastid	12.27	8.31

Protein Annotations

EntrezGene:100256940	wikigene:100256940	MapMan:16.12.5.2	Gene3D:3.30.70.330	ProteinID:CCB43032	ProteinID:CCB43032.1
UniProt:F6GSZ1	EMBL:FN594950	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
InterPro:IPR000504	InterPro:IPR012677	EntrezGene:LOC100256940	wikigene:LOC100256940	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
PRINTS:PR01228	PFscan:PS50102	PANTHER:PTHR44202	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360
SUPFAM:SSF54928	TIGR:TC63166	TIGR:TC64078	UniParc:UPI00015C850F	ArrayExpress:VIT_17s0000g07330	EnsemblPlantsGene:VIT_17s0000g07330
EnsemblPlants:VIT_17s0000g07330.t01	unigene:Vvi.25132	unigene:Vvi.727	RefSeq:XP_002284026	RefSeq:XP_002284026.1	SEG:seg

Description

No Description!

Coordinates

chr17:-:8196072..8201111

Molecular Weight (calculated)

27201.2 Da

IEP (calculated)

4.470

GRAVY (calculated)

-0.575

Length

277 amino acids

Sequence
(BLAST)

001: MAFFGKVGNI LRQTVSKQVN SQFSVSNPSI YQAIRCMSSS KLFIGGLSYS TDDTSLREAF HKYGEVIEAR VIVDRETGRS RGFGFVTFTS SEEASSAIQA
101: LDGQDLHGRR VRVNYATDRA RSGGFGGGGG YGGGGGGYGG GGYGGGGYGG SGGYGGGGYG GGSGGYGGGG DSYGSGGGNY GSGGGGYGGS SGGYGSGGNF
201: SVAGGSDNYV GGAAGSSSGF PSGGGSSFAS GGADQLGTNE SSSVGDGAGE FSPDEPATEG NYRDDDDEPD DYANRRA

Best Arabidopsis Sequence Match ( AT5G61030.2 )
(BLAST)

001: MAFLSKFGNI LKQTTNKQLN AQVSLSSPSL FQAIRCMSSS KLFIGGMAYS MDEDSLREAF TKYGEVVDTR VILDRETGRS RGFGFVTFTS SEAASSAIQA
101: LDGRDLHGRV VKVNYANDRT SGGGFGGGGY GGGGGGYGGS GGYGGGAGGY GGSGGYGGGA GGYGGNSGGG YGGNAAGGYG GSGAGGYGGD ATGHGGAGGG
201: YGSSGGFGSS GNTYGEGSSA SAGAVGDYNG SSGYGSANTY GSSNGGFAGD SQFGGSPVGN SSQFGGDNTQ FTAGGQFGGE DQFGSMEKSE TKMEDGPIGG
301: EFEDVAKRA

Arabidopsis Description

RBG3GR-RBP3 [Source:UniProtKB/TrEMBL;Acc:A0A178UBT5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.