Factsheet for PGSC0003DMT400064758

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 7
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g066930.2.1	Tomato	nucleus	78.49	91.2
PGSC0003DMT400053017	Potato	mitochondrion, plastid	31.47	51.97
PGSC0003DMT400040748	Potato	mitochondrion	29.08	50.34
GSMUA_Achr9P07090_001	Banana	mitochondrion	44.22	46.64
TraesCS3D01G424100.1	Wheat	mitochondrion	40.64	46.58
VIT_17s0000g07330.t01	Wine grape	plastid	51.0	46.21
TraesCS3A01G428400.1	Wheat	mitochondrion	41.43	46.02
KRH01278	Soybean	mitochondrion, nucleus, plastid	44.62	45.9
Os12t0502200-01	Rice	mitochondrion	47.01	45.74
GSMUA_Achr4P03230_001	Banana	mitochondrion	45.82	44.92
TraesCS3B01G465800.1	Wheat	mitochondrion	41.04	44.59
EES16016	Sorghum	mitochondrion	44.22	44.4
KRH45033	Soybean	nucleus, plastid	42.23	43.27
PGSC0003DMT400072235	Potato	mitochondrion, nucleus	45.02	42.97
Zm00001d041750_P001	Maize	mitochondrion	44.62	42.91
PGSC0003DMT400001786	Potato	nucleus	11.95	42.86
Bra035944.1-P	Field mustard	plastid	43.43	41.44
Zm00001d023734_P003	Maize	nucleus, plastid	47.01	41.12
CDY16825	Canola	plastid	43.03	41.06
PGSC0003DMT400084266	Potato	extracellular	25.9	40.37
PGSC0003DMT400072597	Potato	mitochondrion	20.72	40.31
PGSC0003DMT400084290	Potato	nucleus	26.29	39.76
PGSC0003DMT400084258	Potato	nucleus	26.29	39.76
PGSC0003DMT400083014	Potato	nucleus	26.29	39.76
PGSC0003DMT400001879	Potato	cytosol	27.09	38.64
Os07t0602600-01	Rice	mitochondrion	36.26	38.24
Bra012986.1-P	Field mustard	mitochondrion	46.22	38.03
PGSC0003DMT400003685	Potato	nucleus	45.82	37.95
HORVU3Hr1G094330.2	Barley	mitochondrion	45.42	37.25
TraesCS5B01G470700.1	Wheat	mitochondrion	44.22	36.16
HORVU5Hr1G110370.1	Barley	mitochondrion	41.83	35.84
TraesCS5D01G473100.1	Wheat	mitochondrion	43.43	35.62
TraesCS5A01G460900.1	Wheat	mitochondrion	43.03	35.41
AT5G61030.1	Thale cress	mitochondrion	43.03	34.95
Zm00001d022065_P001	Maize	mitochondrion	42.63	34.74
CDY02175	Canola	mitochondrion	45.02	33.33
CDX87197	Canola	plastid	43.43	33.13
KXG36643	Sorghum	mitochondrion	41.04	32.59
Os10t0321700-01	Rice	mitochondrion	41.04	32.49
TraesCS2B01G203200.1	Wheat	mitochondrion	41.04	32.29
TraesCS2D01G184200.1	Wheat	mitochondrion	41.43	32.0
PGSC0003DMT400049607	Potato	plastid	17.93	28.66
PGSC0003DMT400056141	Potato	mitochondrion	16.73	28.38
PGSC0003DMT400076497	Potato	nucleus	22.71	27.8
PGSC0003DMT400028726	Potato	nucleus	15.94	27.4
PGSC0003DMT400070114	Potato	endoplasmic reticulum, extracellular	15.54	26.17
PGSC0003DMT400045627	Potato	nucleus	21.91	25.7
PGSC0003DMT400022733	Potato	plastid	14.74	22.7
PGSC0003DMT400043581	Potato	nucleus	20.72	19.19
PGSC0003DMT400079815	Potato	nucleus	18.73	14.78
TraesCS2A01G176700.1	Wheat	mitochondrion	39.04	13.37
PGSC0003DMT400050134	Potato	plastid	15.54	9.75

Protein Annotations

EntrezGene:102580702	MapMan:16.12.5.2	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	UniProt:M1CCV4	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
EnsemblPlantsGene:PGSC0003DMG400025154	PGSC:PGSC0003DMG400025154	EnsemblPlants:PGSC0003DMT400064758	PRINTS:PR01228	PFscan:PS50102	PANTHER:PTHR44202
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI000295D96D	RefSeq:XP_006363431.1
SEG:seg	:	:	:	:	:

Description

RNA-binding glycine-rich protein [Source:PGSC_GENE;Acc:PGSC0003DMG400025154]

Coordinates

chr2:+:25303257..25306536

Molecular Weight (calculated)

26064.1 Da

IEP (calculated)

5.596

GRAVY (calculated)

-0.782

Length

251 amino acids

Sequence
(BLAST)

001: MALFNRIGNM LKQSVSRHTN LELCASRTSL YQAIRSMSSS KLFVGGLSYG TDETSLREAF SQHGQVIEAR VIFDRDTGRS RGFAFVTYTS AEEASSALSA
101: LDGQDLHGRR IRVNYATEKR PGGFGRGSGG GGGFNYGGGA GGYSSANYGG GGNYGSNNSY PAGGGNYGGD SFGARHGGGS SGNYNAGVSG SNDFFNNSEF
201: GGSPGTSHNG GEEQPSADQG TESVNNDFTP GVEGSHRDDN DEPNDYANSR G

Best Arabidopsis Sequence Match ( AT5G61030.2 )
(BLAST)

001: MAFLSKFGNI LKQTTNKQLN AQVSLSSPSL FQAIRCMSSS KLFIGGMAYS MDEDSLREAF TKYGEVVDTR VILDRETGRS RGFGFVTFTS SEAASSAIQA
101: LDGRDLHGRV VKVNYANDRT SGGGFGGGGY GGGGGGYGGS GGYGGGAGGY GGSGGYGGGA GGYGGNSGGG YGGNAAGGYG GSGAGGYGGD ATGHGGAGGG
201: YGSSGGFGSS GNTYGEGSSA SAGAVGDYNG SSGYGSANTY GSSNGGFAGD SQFGGSPVGN SSQFGGDNTQ FTAGGQFGGE DQFGSMEKSE TKMEDGPIGG
301: EFEDVAKRA

Arabidopsis Description

RBG3GR-RBP3 [Source:UniProtKB/TrEMBL;Acc:A0A178UBT5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.