CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus

Predictor Summary:

plastid 3
mitochondrion 5
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH45033	Soybean	nucleus, plastid	92.21	91.84
KRG97345	Soybean	mitochondrion	28.28	48.94
GSMUA_Achr9P07090_001	Banana	mitochondrion	45.08	46.22
Os12t0502200-01	Rice	mitochondrion	48.77	46.12
GSMUA_Achr4P03230_001	Banana	mitochondrion	48.36	46.09
TraesCS3D01G424100.1	Wheat	mitochondrion	40.57	45.21
TraesCS3A01G428400.1	Wheat	mitochondrion	41.8	45.13
PGSC0003DMT400064758	Potato	mitochondrion	45.9	44.62
EES16016	Sorghum	mitochondrion	45.49	44.4
KRH29453	Soybean	nucleus	25.41	44.29
TraesCS3B01G465800.1	Wheat	mitochondrion	41.39	43.72
KRH29454	Soybean	nucleus	29.51	42.35
Solyc02g066930.2.1	Tomato	nucleus	37.3	42.13
Zm00001d041750_P001	Maize	mitochondrion	44.67	41.76
KRH03133	Soybean	nucleus	46.72	41.45
KRH29452	Soybean	nucleus	26.23	41.03
KRH31570	Soybean	mitochondrion	24.18	40.69
KRH51528	Soybean	nucleus	30.33	40.66
KRH56813	Soybean	mitochondrion	45.49	40.51
KRH29451	Soybean	nucleus	28.28	40.35
Zm00001d023734_P003	Maize	nucleus, plastid	46.31	39.37
HORVU5Hr1G110370.1	Barley	mitochondrion	46.31	38.57
KRH60842	Soybean	mitochondrion	29.1	38.38
TraesCS5A01G460900.1	Wheat	mitochondrion	45.08	36.07
HORVU3Hr1G094330.2	Barley	mitochondrion	45.08	35.95
TraesCS5D01G473100.1	Wheat	mitochondrion	45.08	35.95
TraesCS5B01G470700.1	Wheat	mitochondrion	45.08	35.83
KRH67959	Soybean	mitochondrion	18.85	35.38
Os10t0321700-01	Rice	mitochondrion	45.49	35.02
PGSC0003DMT400003685	Potato	nucleus	43.44	34.98
KRH23034	Soybean	mitochondrion	11.89	33.72
Os07t0602600-01	Rice	mitochondrion	32.79	33.61
Solyc02g088790.2.1	Tomato	extracellular, plastid	50.82	33.24
KRH17905	Soybean	cytosol, mitochondrion, nucleus	11.07	32.53
KRH10291	Soybean	nucleus	9.84	32.43
KRH27720	Soybean	endoplasmic reticulum, mitochondrion	12.7	31.96
KRH77758	Soybean	mitochondrion	14.75	31.86
KRH55574	Soybean	mitochondrion, plastid	18.85	31.72
TraesCS2B01G203200.1	Wheat	mitochondrion	41.39	31.66
KRH67547	Soybean	mitochondrion	18.03	31.65
KRG95817	Soybean	mitochondrion	17.62	30.94
TraesCS2D01G184200.1	Wheat	mitochondrion	40.98	30.77
KRH25927	Soybean	mitochondrion, plastid	18.03	30.34
KRH50325	Soybean	vacuole	17.21	30.0
KXG36643	Sorghum	mitochondrion	38.11	29.43
Zm00001d022065_P001	Maize	mitochondrion	36.89	29.22
KRH24829	Soybean	mitochondrion	16.39	27.4
KRH42209	Soybean	endoplasmic reticulum	19.26	26.7
KRH58335	Soybean	nucleus	21.31	25.0
KRH24832	Soybean	endoplasmic reticulum	14.34	24.82
KRH09475	Soybean	plastid	16.8	22.78
KRG90774	Soybean	nucleus	22.54	19.71
KRH38934	Soybean	plastid	12.3	19.48
KRH40931	Soybean	mitochondrion	15.57	16.45
KRH35987	Soybean	nucleus	19.26	16.26
KRH54698	Soybean	plastid	40.57	14.69
TraesCS2A01G176700.1	Wheat	mitochondrion	40.98	13.64
KRG92035	Soybean	plastid	15.98	10.0

Protein Annotations

EntrezGene:100807155	MapMan:16.12.5.2	Gene3D:3.30.70.330	EMBL:ACUP02011509	EnsemblPlantsGene:GLYMA_18G266500	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	UniProt:I1N4J8	InterPro:IPR000504	InterPro:IPR012677
EnsemblPlants:KRH01278	ProteinID:KRH01278	ProteinID:KRH01278.1	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102
PANTHER:PTHR44202	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI000233EB4B
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr18:-:55088284..55091427

Molecular Weight (calculated)

25490.5 Da

IEP (calculated)

4.477

GRAVY (calculated)

-0.736

Length

244 amino acids

Sequence
(BLAST)

001: MAFLNKIGNL LKNSAVKHIN QDFSASTPSL FQAIRSMSSA KLFVGGISYS TDDMSLRESF ARYGEVIDVK VIMDRETGRS RGFGFVTFAT SEDASSAIQG
101: MDGQDLHGRR IRVNYATERS RPGFGGDGGY GSGGGGYNGG GNYGSGGGYG GGGGYNRGGN YGSGGYNVTS SYSGGNAETS YTGGGNASNY QFNENSGGDF
201: GSASGEFSSN QNDTAGADND EFIEPLEDNV RENNDGPTDY AQNR

Best Arabidopsis Sequence Match ( AT5G61030.2 )
(BLAST)

001: MAFLSKFGNI LKQTTNKQLN AQVSLSSPSL FQAIRCMSSS KLFIGGMAYS MDEDSLREAF TKYGEVVDTR VILDRETGRS RGFGFVTFTS SEAASSAIQA
101: LDGRDLHGRV VKVNYANDRT SGGGFGGGGY GGGGGGYGGS GGYGGGAGGY GGSGGYGGGA GGYGGNSGGG YGGNAAGGYG GSGAGGYGGD ATGHGGAGGG
201: YGSSGGFGSS GNTYGEGSSA SAGAVGDYNG SSGYGSANTY GSSNGGFAGD SQFGGSPVGN SSQFGGDNTQ FTAGGQFGGE DQFGSMEKSE TKMEDGPIGG
301: EFEDVAKRA

Arabidopsis Description

RBG3GR-RBP3 [Source:UniProtKB/TrEMBL;Acc:A0A178UBT5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.