Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 6
- extracellular 2
- endoplasmic reticulum 3
- vacuole 2
- plasma membrane 2
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH38934 | Soybean | plastid | 74.44 | 87.01 |
| CDX82066 | Canola | cytosol, nucleus, plastid | 33.89 | 63.54 |
| Solyc09g011210.2.1 | Tomato | plastid | 44.44 | 60.61 |
| GSMUA_Achr5P15860_001 | Banana | plastid | 51.67 | 54.71 |
| Bra008100.1-P | Field mustard | cytosol | 23.89 | 52.44 |
| VIT_17s0053g00760.t01 | Wine grape | plastid | 45.0 | 50.94 |
| PGSC0003DMT400022733 | Potato | plastid | 45.56 | 50.31 |
| Zm00001d026016_P002 | Maize | plastid | 40.56 | 48.67 |
| KXG26990 | Sorghum | plastid | 39.44 | 48.3 |
| KRH23034 | Soybean | mitochondrion | 20.56 | 43.02 |
| AT1G73530.1 | Thale cress | plastid | 41.67 | 41.44 |
| KRG95817 | Soybean | mitochondrion | 30.56 | 39.57 |
| KRH67547 | Soybean | mitochondrion | 30.0 | 38.85 |
| KRH67959 | Soybean | mitochondrion | 27.22 | 37.69 |
| KRH25927 | Soybean | mitochondrion, plastid | 30.0 | 37.24 |
| KRH10291 | Soybean | nucleus | 15.0 | 36.49 |
| KRH77758 | Soybean | mitochondrion | 22.78 | 36.28 |
| KRH27720 | Soybean | endoplasmic reticulum, mitochondrion | 19.44 | 36.08 |
| KRH55574 | Soybean | mitochondrion, plastid | 28.33 | 35.17 |
| Bra003841.1-P | Field mustard | cytosol, nucleus, plastid | 46.11 | 32.3 |
| Os04t0583800-01 | Rice | plastid | 20.56 | 31.36 |
| KRH29453 | Soybean | nucleus | 19.44 | 25.0 |
| KRG97345 | Soybean | mitochondrion | 19.44 | 24.82 |
| KRH24832 | Soybean | endoplasmic reticulum | 17.78 | 22.7 |
| KRH24829 | Soybean | mitochondrion | 18.33 | 22.6 |
| KRH29452 | Soybean | nucleus | 19.44 | 22.44 |
| KRH17905 | Soybean | cytosol, mitochondrion, nucleus | 10.0 | 21.69 |
| KRH50325 | Soybean | vacuole | 16.67 | 21.43 |
| KRH31570 | Soybean | mitochondrion | 17.22 | 21.38 |
| KRH29451 | Soybean | nucleus | 19.44 | 20.47 |
| KRH51528 | Soybean | nucleus | 20.56 | 20.33 |
| KRH29454 | Soybean | nucleus | 18.89 | 20.0 |
| KRH60842 | Soybean | mitochondrion | 19.44 | 18.92 |
| KRH45033 | Soybean | nucleus, plastid | 23.33 | 17.14 |
| KRH42209 | Soybean | endoplasmic reticulum | 16.67 | 17.05 |
| KRH01278 | Soybean | mitochondrion, nucleus, plastid | 22.78 | 16.8 |
| KRH56813 | Soybean | mitochondrion | 22.22 | 14.6 |
| KRH03133 | Soybean | nucleus | 22.22 | 14.55 |
| KRH58335 | Soybean | nucleus | 16.67 | 14.42 |
| KRH40931 | Soybean | mitochondrion | 17.78 | 13.85 |
| KRG92035 | Soybean | plastid | 28.33 | 13.08 |
| KRG90774 | Soybean | nucleus | 17.22 | 11.11 |
| KRH35987 | Soybean | nucleus | 12.22 | 7.61 |
| KRH54698 | Soybean | plastid | 17.22 | 4.6 |
Protein Annotations
| EntrezGene:100305561 | Gene3D:3.30.70.330 | MapMan:35.1 | EMBL:ACUP02010276 | EMBL:BT089225 | UniProt:C6SVN2 |
| EnsemblPlantsGene:GLYMA_16G217600 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR000504 |
| InterPro:IPR012677 | EnsemblPlants:KRH09475 | ProteinID:KRH09475 | ProteinID:KRH09475.1 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 |
| PFscan:PS50102 | PANTHER:PTHR45392 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 |
| UniParc:UPI0001B15766 | SEG:seg | : | : | : | : |
Description
hypothetical protein
Coordinates
chr16:+:37462758..37465998
Molecular Weight (calculated)
20019.1 Da
IEP (calculated)
10.689
GRAVY (calculated)
-0.308
Length
180 amino acids
Sequence
(BLAST)
(BLAST)
001: MANNVVVVLK VAPVSLPPFP ITNNALTFKS QRHTLHLNCF QTKNRTTSFP SSSSILRNKA SCSVLACLPP ESSTSSSTAK PSFPSPQTKL YVSGLSFRTT
101: EESLRNAFKN FGQLVEVKLV MDRIANRPRG FAFLRYATEE ESQKAIEGMH GKFLDGRVIF VEVAKPRSEL APRKQEDTRL
101: EESLRNAFKN FGQLVEVKLV MDRIANRPRG FAFLRYATEE ESQKAIEGMH GKFLDGRVIF VEVAKPRSEL APRKQEDTRL
001: MAISLGRVVV PSCTISGDRL FIPNFSAICS VSCGRINVGT GVISARRRRD IGGVLISSCL STDSSSSPPS SSSGPKTKLY VSGLSFRTTE DTLRDTFEQF
101: GNLIHMNMVM DKVANRPKGF AFLRYETEEE AMKAIQGMHG KFLDGRVIFV EEAKTRSDMS RAKPRRDFPK PQSKPRTFRT W
101: GNLIHMNMVM DKVANRPKGF AFLRYETEEE AMKAIQGMHG KFLDGRVIFV EEAKTRSDMS RAKPRRDFPK PQSKPRTFRT W
Arabidopsis Description
ORRM6Organelle RRM domain-containing protein 6, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FX45]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.