Factsheet for GSMUA_Achr5P15860_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX82066	Canola	cytosol, nucleus, plastid	37.06	65.62
Solyc09g011210.2.1	Tomato	plastid	45.88	59.09
Bra008100.1-P	Field mustard	cytosol	26.47	54.88
KRH09475	Soybean	plastid	54.71	51.67
PGSC0003DMT400022733	Potato	plastid	48.24	50.31
Zm00001d026016_P002	Maize	plastid	44.12	50.0
KXG26990	Sorghum	plastid	42.35	48.98
VIT_17s0053g00760.t01	Wine grape	plastid	43.53	46.54
AT1G73530.1	Thale cress	plastid	48.82	45.86
KRH38934	Soybean	plastid	40.59	44.81
GSMUA_Achr11P...	Banana	mitochondrion	24.12	37.96
GSMUA_Achr6P34250_001	Banana	mitochondrion	24.12	37.27
GSMUA_Achr5P26410_001	Banana	cytosol, mitochondrion, nucleus	24.71	36.52
GSMUA_Achr8P07380_001	Banana	mitochondrion	28.82	36.3
Bra003841.1-P	Field mustard	cytosol, nucleus, plastid	54.12	35.8
Os04t0583800-01	Rice	plastid	23.53	33.9
GSMUA_Achr6P15340_001	Banana	plastid	33.53	32.39
GSMUA_Achr6P35640_001	Banana	nucleus	25.29	30.94
GSMUA_Achr2P19090_001	Banana	mitochondrion	18.82	30.19
GSMUA_Achr11P...	Banana	mitochondrion	19.41	25.0
GSMUA_Achr7P27650_001	Banana	nucleus	18.82	24.06
GSMUA_Achr7P02750_001	Banana	mitochondrion	20.59	23.33
GSMUA_Achr8P05200_001	Banana	cytosol	19.41	21.29
GSMUA_Achr4P14550_001	Banana	nucleus	18.82	20.25
GSMUA_Achr4P16080_001	Banana	mitochondrion	22.35	20.0
GSMUA_Achr5P26170_001	Banana	nucleus, peroxisome, plasma membrane	18.24	18.45
GSMUA_Achr3P30570_001	Banana	plasma membrane	18.24	18.24
GSMUA_Achr9P07090_001	Banana	mitochondrion	23.53	16.81
GSMUA_Achr8P07840_001	Banana	mitochondrion, nucleus, plasma membrane	18.24	16.23
GSMUA_Achr3P22540_001	Banana	nucleus, peroxisome, plasma membrane	19.41	16.1
GSMUA_Achr2P01230_001	Banana	nucleus	28.24	15.38
GSMUA_Achr4P03230_001	Banana	mitochondrion	22.94	15.23
GSMUA_Achr2P12550_001	Banana	nucleus	18.82	14.29
GSMUA_Achr4P22370_001	Banana	nucleus	20.0	10.93
GSMUA_Achr4P28550_001	Banana	cytosol, mitochondrion, nucleus	21.18	10.43

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016554	GO:GO:1900871
EnsemblPlantsGene:GSMUA_Achr5G15860_001	EnsemblPlants:GSMUA_Achr5P15860_001	EnsemblPlants:GSMUA_Achr5T15860_001	InterPro:IPR000504	InterPro:IPR012677	UniProt:M0SYW5
InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR45502	InterPro:RBD_domain_sf	InterPro:RRM_dom
SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0002959A65	SEG:seg	:	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr5G15860_001]

Coordinates

chr5:+:12376416..12379823

Molecular Weight (calculated)

18944.4 Da

IEP (calculated)

11.507

GRAVY (calculated)

-0.532

Length

170 amino acids

Sequence
(BLAST)

001: MATGLLPAAS PPPSSSLRER RHTPDITSST SSSSWFLARF PSIRSSRSPW PSAATSRRRS GGFSVSCCLP PTPSTKLYVS GLSFRTTEES LRNAFQNFGQ
101: LVEVNLVMDR IANRPRGFAF LRYATEEESK KAIEGMHGKF LDGRVIFVEV AKPRSDVRQA SRQTPERYRS

Best Arabidopsis Sequence Match ( AT1G73530.1 )
(BLAST)

001: MAISLGRVVV PSCTISGDRL FIPNFSAICS VSCGRINVGT GVISARRRRD IGGVLISSCL STDSSSSPPS SSSGPKTKLY VSGLSFRTTE DTLRDTFEQF
101: GNLIHMNMVM DKVANRPKGF AFLRYETEEE AMKAIQGMHG KFLDGRVIFV EEAKTRSDMS RAKPRRDFPK PQSKPRTFRT W

Arabidopsis Description

ORRM6Organelle RRM domain-containing protein 6, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FX45]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.