Factsheet for Solyc09g011210.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400022733	Potato	plastid	90.91	73.62
CDX82066	Canola	cytosol, nucleus, plastid	45.45	62.5
Bra008100.1-P	Field mustard	cytosol	33.33	53.66
GSMUA_Achr5P15860_001	Banana	plastid	59.09	45.88
KRH09475	Soybean	plastid	60.61	44.44
Zm00001d026016_P002	Maize	plastid	48.48	42.67
KXG26990	Sorghum	plastid	46.97	42.18
VIT_17s0053g00760.t01	Wine grape	plastid	50.0	41.51
KRH38934	Soybean	plastid	46.21	39.61
AT1G73530.1	Thale cress	plastid	50.76	37.02
Solyc10g084630.1.1	Tomato	mitochondrion	34.09	32.61
Solyc10g083240.1.1	Tomato	mitochondrion	29.55	30.23
Solyc07g063900.2.1	Tomato	plastid	34.09	29.8
Solyc09g092320.2.1	Tomato	mitochondrion, nucleus	25.76	29.31
Solyc06g035610.2.1	Tomato	mitochondrion	31.82	29.17
Bra003841.1-P	Field mustard	cytosol, nucleus, plastid	53.79	27.63
Solyc10g051390.1.1	Tomato	nucleus	24.24	27.12
Solyc07g049270.2.1	Tomato	mitochondrion	26.52	24.82
Solyc10g051380.1.1	Tomato	nucleus	22.73	23.08
Os04t0583800-01	Rice	plastid	19.7	22.03
Solyc05g053780.2.1	Tomato	mitochondrion	24.24	19.88
Solyc01g109660.2.1	Tomato	extracellular	25.76	19.43
Solyc02g066930.2.1	Tomato	nucleus	27.27	16.67
Solyc10g081180.1.1	Tomato	nucleus	26.52	15.91
Solyc01g104840.2.1	Tomato	nucleus	22.73	13.45
Solyc10g047130.1.1	Tomato	nucleus	21.21	11.72
Solyc11g007160.1.1	Tomato	plastid	31.82	10.5
Solyc02g088790.2.1	Tomato	extracellular, plastid	28.03	9.92
Solyc03g071560.2.1	Tomato	nucleus	22.73	9.55
Solyc11g008210.1.1	Tomato	nucleus	13.64	6.1

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016554	GO:GO:1900871
InterPro:IPR000504	InterPro:IPR012677	UniProt:K4CRE7	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102
PANTHER:PTHR45502	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	EnsemblPlantsGene:Solyc09g011210.2
EnsemblPlants:Solyc09g011210.2.1	UniParc:UPI000276B141	:	:	:	:

Description

No Description!

Coordinates

chr9:-:4553223..4555661

Molecular Weight (calculated)

14692.7 Da

IEP (calculated)

10.268

GRAVY (calculated)

-0.214

Length

132 amino acids

Sequence
(BLAST)

001: MAGIVMAAAY SGATLIRYPQ IVSACYAQSS SSATPINFNS STKLFVSGLS FRTTEESLRK TFNHFGELVE VNLMMDKIAN RPRGFAFIRY ATEEESQKAI
101: EGMHGKFLDG RVIFVEVAKS RSELRRGPKS QR

Best Arabidopsis Sequence Match ( AT1G73530.1 )
(BLAST)

001: MAISLGRVVV PSCTISGDRL FIPNFSAICS VSCGRINVGT GVISARRRRD IGGVLISSCL STDSSSSPPS SSSGPKTKLY VSGLSFRTTE DTLRDTFEQF
101: GNLIHMNMVM DKVANRPKGF AFLRYETEEE AMKAIQGMHG KFLDGRVIFV EEAKTRSDMS RAKPRRDFPK PQSKPRTFRT W

Arabidopsis Description

ORRM6Organelle RRM domain-containing protein 6, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FX45]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.