Factsheet for Solyc10g051390.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g007330.2.1
Solyc01g007940.2.1
Solyc01g028810.2.1
Solyc01g080280.2.1
Solyc01g109660.2.1
Solyc01g111780.2.1
Solyc02g020940.2.1
Solyc02g072390.1.1
Solyc03g078400.2.1
Solyc03g112150.1.1
Solyc04g009030.2.1
Solyc04g039850.1.1
Solyc04g082630.2.1
Solyc05g013380.2.1
Solyc05g014470.2.1
Solyc05g050970.2.1
Solyc06g064940.2.1
Solyc06g071790.2.1
Solyc07g056540.2.1
Solyc07g066610.2.1
Solyc08g008260.2.1
Solyc08g062800.2.1
Solyc09g011080.2.1
Solyc09g090580.2.1
Solyc10g018300.1.1
Solyc10g051380.1.1
Solyc10g051390.1.1
Solyc10g081510.1.1
Solyc10g086580.1.1
Solyc11g005330.1.1
Solyc11g051160.1.1
Solyc11g051170.1.1
Solyc12g056060.1.1
Solyc12g094640.1.1
Solyc12g095990.1.1
Solyc12g096000.1.1
Solyc12g099930.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G21660.1	Solyc05g014470.2.1	AT1G13440.1	23395902
AT2G21660.1	Solyc01g007940.2.1	AT1G23310.1	23395902
AT2G21660.1	Solyc05g013380.2.1	AT1G23310.1	23395902
AT2G21660.1	Solyc04g082630.2.1	AT1G42970.1	23395902
AT2G21660.1	Solyc12g094640.1.1	AT1G42970.1	23395902
AT2G21660.1	Solyc03g078400.2.1	AT1G49240.1	23395902
AT2G21660.1	Solyc11g005330.1.1	AT1G49240.1	23395902
AT2G21660.1	Solyc08g062800.2.1	AT1G54270.1	23395902
AT2G21660.1	Solyc12g095990.1.1	AT1G54270.1	23395902
AT2G21660.1	Solyc12g096000.1.1	AT1G54270.1	23395902
AT2G21660.1	Solyc06g064940.2.1	AT1G72150.1	23395902
AT2G21660.1	Solyc11g051160.1.1	AT1G72150.1	23395902
AT2G21660.1	Solyc12g099930.1.1	AT2G13360.1	23395902
AT2G21660.1	Solyc01g111780.2.1	AT2G16950.1	14756317
AT2G21660.1	Solyc09g011080.2.1	AT2G39730.1	23395902
AT2G21660.1	Solyc10g086580.1.1	AT2G39730.1	23395902
AT2G21660.1	Solyc05g014470.2.1	AT3G04120.1	23395902
AT2G21660.1	Solyc07g066610.2.1	AT3G12780.1	23395902
AT2G21660.1	Solyc01g028810.2.1	AT3G13470.1	23395902
AT2G21660.1	Solyc07g056540.2.1	AT3G14420.1	23395902
AT2G21660.1	Solyc02g020940.2.1	AT3G26650.1	23395902
AT2G21660.1	Solyc04g009030.2.1	AT3G26650.1	23395902
AT2G21660.1	Solyc05g050970.2.1	AT3G60750.1	23395902
AT2G21660.1	Solyc10g018300.1.1	AT3G60750.1	23395902
AT2G21660.1	Solyc03g112150.1.1	AT4G20360.1	23395902
AT2G21660.1	Solyc06g071790.2.1	AT4G20360.1	23395902
AT2G21660.1	Solyc01g109660.2.1	AT4G39260.1	23395902
AT2G21660.1	Solyc10g051380.1.1	AT4G39260.1	23395902
AT2G21660.1	Solyc10g051390.1.1	AT4G39260.1	23395902
AT2G21660.1	Solyc03g078400.2.1	AT5G09810.1	23395902
AT2G21660.1	Solyc11g005330.1.1	AT5G09810.1	23395902
AT2G21660.1	Solyc10g081510.1.1	AT5G17920.1	23395902
AT2G21660.1	Solyc09g090580.2.1	AT5G35620.1	23395902
AT2G21660.1	Solyc01g080280.2.1	AT5G35630.1	23395902
AT2G21660.1	Solyc08g008260.2.1	AT5G41780.1	23395902
AT2G21660.1	Solyc12g056060.1.1	AT5G41780.1	23395902
AT2G21660.1	Solyc02g072390.1.1	AT5G46330.1	23395902
AT2G21660.1	Solyc11g051170.1.1	ATCG00120.1	23395902
AT2G21660.1	Solyc04g039850.1.1	ATCG00480.1	23395902
AT2G21660.1	Solyc01g007330.2.1	ATCG00490.1	23395902

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g051380.1.1	Tomato	nucleus	81.36	73.85
PGSC0003DMT400084266	Potato	extracellular	96.61	70.81
CDY46213	Canola	nucleus	61.02	59.02
CDY41969	Canola	cytosol	62.71	57.81
Zm00001d041246_P001	Maize	nucleus	70.34	57.24
GSMUA_Achr7P27650_001	Banana	nucleus	64.41	57.14
KRH29452	Soybean	nucleus	75.42	57.05
CDY59763	Canola	nucleus	80.51	56.89
Bra031210.1-P	Field mustard	nucleus	80.51	56.55
CDY70933	Canola	nucleus	80.51	56.55
KRH29453	Soybean	nucleus	66.95	56.43
GSMUA_Achr4P14550_001	Banana	nucleus	75.42	56.33
CDY42616	Canola	cytosol	74.58	56.05
CDX90323	Canola	plastid	77.97	55.76
Bra010693.1-P	Field mustard	nucleus	77.97	55.76
CDY12133	Canola	cytosol	74.58	55.7
Bra011869.1-P	Field mustard	cytosol	76.27	55.56
Bra030284.1-P	Field mustard	nucleus	78.81	55.36
CDY15876	Canola	nucleus	78.81	55.03
Solyc01g109660.2.1	Tomato	extracellular	81.36	54.86
CDY72366	Canola	nucleus	78.81	54.39
VIT_03s0063g02610.t01	Wine grape	nucleus	74.58	54.32
Bra001972.1-P	Field mustard	nucleus	75.42	54.27
Zm00001d031168_P001	Maize	plastid	71.19	54.19
Os12t0632000-01	Rice	nucleus	73.73	53.7
GSMUA_Achr3P30570_001	Banana	plasma membrane	76.27	52.94
AT2G21660.1	Thale cress	nucleus	78.81	52.84
Zm00001d013568_P001	Maize	extracellular, mitochondrion, plasma membrane, plastid	71.19	52.83
EES16438	Sorghum	nucleus	73.73	52.73
TraesCS5B01G013200.1	Wheat	nucleus	74.58	52.69
AT4G39260.1	Thale cress	nucleus	75.42	52.66
GSMUA_Achr8P05200_001	Banana	cytosol	68.64	52.26
TraesCS4B01G020300.1	Wheat	extracellular	72.03	52.15
KRH29451	Soybean	nucleus	75.42	52.05
TraesCS4A01G293000.1	Wheat	plastid	71.19	51.85
TraesCS5A01G015000.1	Wheat	nucleus	74.58	51.76
KRH29454	Soybean	nucleus	73.73	51.18
CDX71276	Canola	nucleus	74.58	51.16
TraesCS4D01G018500.1	Wheat	nucleus	71.19	50.6
KXG37870	Sorghum	nucleus	72.03	50.0
TraesCS5D01G020900.1	Wheat	plastid	73.73	50.0
HORVU5Hr1G002150.1	Barley	nucleus	72.88	49.71
TraesCS6D01G199100.1	Wheat	nucleus	65.25	49.68
KRH51528	Soybean	nucleus	75.42	48.9
TraesCS6A01G216500.1	Wheat	nucleus	66.95	48.77
TraesCS6B01G246400.1	Wheat	nucleus	66.1	48.15
HORVU6Hr1G055440.1	Barley	nucleus	65.25	47.53
Os03t0670700-01	Rice	nucleus	78.81	47.45
KRH60842	Soybean	mitochondrion	72.88	46.49
Solyc09g092320.2.1	Tomato	mitochondrion, nucleus	40.68	41.38
HORVU5Hr1G089190.1	Barley	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	33.9	40.4
Solyc05g053780.2.1	Tomato	mitochondrion	52.54	38.51
Solyc10g081180.1.1	Tomato	nucleus	55.93	30.0
Solyc10g083240.1.1	Tomato	mitochondrion	32.2	29.46
Solyc02g066930.2.1	Tomato	nucleus	47.46	25.93
Solyc07g049270.2.1	Tomato	mitochondrion	30.51	25.53
Solyc10g047130.1.1	Tomato	nucleus	50.85	25.1
Solyc09g011210.2.1	Tomato	plastid	27.12	24.24
Solyc10g084630.1.1	Tomato	mitochondrion	27.97	23.91
Solyc01g104840.2.1	Tomato	nucleus	44.92	23.77
Solyc07g063900.2.1	Tomato	plastid	27.97	21.85
Solyc06g035610.2.1	Tomato	mitochondrion	25.42	20.83
Solyc03g071560.2.1	Tomato	nucleus	46.61	17.52
Solyc02g088790.2.1	Tomato	extracellular, plastid	47.46	15.01
Solyc11g008210.1.1	Tomato	nucleus	35.59	14.24
Solyc11g007160.1.1	Tomato	plastid	27.12	8.0

Protein Annotations

EnsemblPlants:Solyc10g051390.1.1	EnsemblPlantsGene:Solyc10g051390.1	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf	InterPro:RRM_dom
PANTHER:PTHR44993	PANTHER:PTHR44993:SF1	PFAM:PF00076	PFscan:PS50102	SEG:seg	SMART:SM00360
SUPFAM:SSF54928	UniParc:UPI000276A6E6	UniProt:K4D0U1	MapMan:16.7.2	:	:

Description

No Description!

Coordinates

chr10:+:52082138..52082910

Molecular Weight (calculated)

12129.8 Da

IEP (calculated)

4.659

GRAVY (calculated)

-0.630

Length

118 amino acids

Sequence
(BLAST)

001: MAAEVEYSCF VGGLAWATTD RTLSDAFSTY GEVVDSKIIN DRETGRSRGF GFVTFKDEKS MKDAISGMNG QELDGRNITV NEAQARGSGG GGGGYGGGRR
101: EGGGGGYGGG GGYGGDRY

Best Arabidopsis Sequence Match ( AT2G21660.1 )
(BLAST)

001: MASGDVEYRC FVGGLAWATD DRALETAFAQ YGDVIDSKII NDRETGRSRG FGFVTFKDEK AMKDAIEGMN GQDLDGRSIT VNEAQSRGSG GGGGHRGGGG
101: GGYRSGGGGG YSGGGGSYGG GGGRREGGGG YSGGGGGYSS RGGGGGSYGG GRREGGGGYG GGEGGGYGGS GGGGGW

Arabidopsis Description

RBG7Glycine-rich RNA-binding protein 7 [Source:UniProtKB/Swiss-Prot;Acc:Q03250]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.