Factsheet for Solyc04g082630.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 1
plastid 9
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 28183294
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 28183294 doi

R Tamburino, M Vitale, A Ruggiero, M Sassi, L Sannino, S Arena, A Costa, G Batelli, N Zambrano, A Scaloni, S Grillo, N Scotti

Center of Genetics Engineering (CEINGE) Biotecnologie Avanzate S.c. a R.l, via Pansini, 80100, Napoli, Italy., Department of Molecular Medicine and Medical Biotechnology, University of Naples Federico II, via Pansini, 80100, Napoli, Italy., Institute for the Animal Production System in the Mediterranean Environment, National Research Council of Italy (CNR-ISPAAM), via Argine 1085, 80147, Napoli, Italy., Institute of Biosciences and BioResources, National Research Council of Italy (CNR-IBBR), via Università 133, 80055, Portici, NA, Italy., Institute of Biosciences and BioResources, National Research Council of Italy (CNR-IBBR), via Università 133, 80055, Portici, NA, Italy. nscotti@unina.it.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc04g082630.2.1
Solyc12g094640.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G42970.1	Solyc04g082630.2.1	AT1G42970.1	21798944
AT1G42970.1	Solyc12g094640.1.1	AT1G42970.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400025881	Potato	plastid	93.91	99.33
Solyc12g094640.1.1	Tomato	plastid	88.03	93.11
VIT_18s0122g00960.t01	Wine grape	plastid	85.92	90.29
KRH51576	Soybean	nucleus, plastid	85.29	89.62
GSMUA_Achr11P...	Banana	mitochondrion	73.95	89.57
KRH60895	Soybean	nucleus, plastid	84.66	89.36
CDY69523	Canola	cytosol	75.0	88.81
AT1G42970.1	Thale cress	plastid	81.72	87.02
CDY35800	Canola	plastid	81.51	86.61
Bra034927.1-P	Field mustard	plastid	81.51	86.61
GSMUA_Achr11P...	Banana	plastid	81.51	85.84
KXG40264	Sorghum	plastid	77.31	82.88
Os03t0129300-01	Rice	extracellular, plastid	76.68	82.21
TraesCS4D01G319400.1	Wheat	plastid	75.84	81.31
TraesCS4B01G323000.1	Wheat	plastid	75.63	81.08
HORVU4Hr1G082700.4	Barley	plastid	75.42	80.86
Zm00001d027488_P001	Maize	extracellular, plastid	76.26	80.85
TraesCS5A01G495100.1	Wheat	golgi, plastid	75.21	80.63
Solyc04g009030.2.1	Tomato	plastid	63.24	75.44
KRH74912	Soybean	cytosol	21.43	72.86
Solyc02g020940.2.1	Tomato	plastid	61.55	71.64
Solyc05g014480.2.1	Tomato	cytosol	3.99	50.0
Solyc03g111010.2.1	Tomato	plastid	35.29	49.85
Solyc05g014470.2.1	Tomato	extracellular, plastid	35.08	49.41
Solyc06g071920.2.1	Tomato	nucleus	34.03	48.07
Solyc05g005820.2.1	Tomato	plastid, unclear	33.19	46.88
Solyc10g005510.2.1	Tomato	plastid	37.82	42.96
Solyc01g098950.1.1	Tomato	cytosol	25.0	42.81
Solyc03g111000.2.1	Tomato	cytosol	13.03	35.63

Protein Annotations

KEGG:00010+1.2.1.12	KEGG:00710+1.2.1.12	MapMan:1.2.3	Gene3D:3.30.360.10	Gene3D:3.40.50.720	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005975	GO:GO:0006006	GO:GO:0008150
GO:GO:0008152	GO:GO:0016491	GO:GO:0016620	GO:GO:0050661	GO:GO:0051287	GO:GO:0055114
InterPro:GlycerAld/Erythrose_P_DH	InterPro:GlycerAld_3-P_DH_AS	InterPro:GlycerAld_3-P_DH_NAD(P)-bd	InterPro:GlycerAld_3-P_DH_cat	InterPro:Glyceraldehyde-3-P_DH_1	UniProt:K4BVZ0
InterPro:NAD(P)-bd_dom_sf	PFAM:PF00044	PFAM:PF02800	PRINTS:PR00078	ScanProsite:PS00071	PANTHER:PTHR43148
PANTHER:PTHR43148:SF1	SMART:SM00846	SUPFAM:SSF51735	SUPFAM:SSF55347	EnsemblPlantsGene:Solyc04g082630.2	EnsemblPlants:Solyc04g082630.2.1
TIGRFAMs:TIGR01534	UniParc:UPI0002766871	SEG:seg	:	:	:

Description

Glyceraldehyde-3-phosphate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:K4BVZ0]

Coordinates

chr4:-:66250649..66253781

Molecular Weight (calculated)

50942.8 Da

IEP (calculated)

7.313

GRAVY (calculated)

-0.082

Length

476 amino acids

Sequence
(BLAST)

001: MVGTNHILNH IYQKRSSFPQ DHLVAAMASH AALASSRIPT STRLPSNKNS YSFPTQCLSK KFEVAEFSGL RSSGCVTFSN RESSFFDVVS AQLTPKTTGS
101: APAKGETVAK LKVAINGFGR IGRNFLRCWH GRKDSPLDVV VVNDSGGVKN ASHLLKYDSM LGTFKADVKI VDNETISVDG KHIKVVSSRD PLKLPWAELG
201: IDIVIEGTGV FVDGPGAGKH IQAGAKKVII TAPAKGADIP TYVVGVNEQD YSHEIANIIS NASCTTNCLA PFVKVMDEEL GIVKGTMTTT HSYTGDQRLL
301: DASHRDLRRA RAAALNIVPT STGAAKAVSL VLPQLKGKLN GIALRVPTPN VSVVDLVVNV EKKGITAEDV NAAFRKAADG PLKGILDVCD APLVSVDFRC
401: SDVSSTIDSS LTMVMGDDMV KVVAWYDNEW GYSQRVVDLA HLVASKWPGV AAPGSGDPLD EFCETNPSDE ECKVYE

Best Arabidopsis Sequence Match ( AT1G42970.1 )
(BLAST)

001: MATHAALAVS RIPVTQRLQS KSAIHSFPAQ CSSKRLEVAE FSGLRMSSIG GEASFFDAVA AQIIPKAVTT STPVRGETVA KLKVAINGFG RIGRNFLRCW
101: HGRKDSPLEV VVLNDSGGVK NASHLLKYDS MLGTFKAEVK IVDNETISVD GKLIKVVSNR DPLKLPWAEL GIDIVIEGTG VFVDGPGAGK HIQAGASKVI
201: ITAPAKGADI PTYVMGVNEQ DYGHDVANII SNASCTTNCL APFAKVLDEE FGIVKGTMTT THSYTGDQRL LDASHRDLRR ARAAALNIVP TSTGAAKAVS
301: LVLPQLKGKL NGIALRVPTP NVSVVDLVIN VEKKGLTAED VNEAFRKAAN GPMKGILDVC DAPLVSVDFR CSDVSTTIDS SLTMVMGDDM VKVVAWYDNE
401: WGYSQRVVDL AHLVASKWPG AEAVGSGDPL EDFCKTNPAD EECKVYD

Arabidopsis Description

GAPBGlyceraldehyde-3-phosphate dehydrogenase GAPB, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P25857]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.