Factsheet for Solyc06g071920.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 5
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

nucleus: 25464976
plastid: 26371478
unclear: 26455813
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400069357	Potato	cytosol	99.11	99.11
Solyc03g111010.2.1	Tomato	plastid	93.47	93.47
Solyc05g014470.2.1	Tomato	extracellular, plastid	89.32	89.05
Os04t0486600-01	Rice	plastid	89.02	89.02
Os02t0601300-01	Rice	plasma membrane	88.43	88.43
Zm00001d051001_P002	Maize	cytosol	87.24	87.24
EES05377	Sorghum	cytosol	86.94	86.94
TraesCS6D01G196300.2	Wheat	golgi, nucleus	86.94	86.94
TraesCS6A01G213700.1	Wheat	unclear	86.65	86.65
Zm00001d049641_P001	Maize	plasma membrane, plastid	86.05	86.05
TraesCS7D01G309500.1	Wheat	cytosol	86.05	86.05
TraesCS7B01G213300.1	Wheat	golgi	86.05	86.05
Solyc05g005820.2.1	Tomato	plastid, unclear	86.05	86.05
KXG24320	Sorghum	cytosol	85.76	85.76
KXG21112	Sorghum	cytosol	85.76	85.76
Os08t0126300-01	Rice	cytosol	85.46	85.46
KXG20851	Sorghum	cytosol	85.16	85.16
OQU77090	Sorghum	cytosol	54.9	83.33
Zm00001d035156_P003	Maize	cytosol	86.05	83.09
TraesCS6B01G243700.1	Wheat	endoplasmic reticulum	86.94	81.84
Solyc01g098950.1.1	Tomato	cytosol	66.77	80.94
TraesCS7A01G313100.1	Wheat	cytosol	82.79	80.87
HORVU6Hr1G054520.3	Barley	cytosol, mitochondrion	86.35	79.95
TraesCS7B01G234400.1	Wheat	cytosol	81.31	79.88
Solyc05g014480.2.1	Tomato	cytosol	8.61	76.32
HORVU7Hr1G074690.3	Barley	extracellular, plasma membrane	86.05	73.79
Solyc10g005510.2.1	Tomato	plastid	72.7	58.47
Zm00001d017121_P001	Maize	plastid	87.24	57.65
Solyc03g111000.2.1	Tomato	cytosol	27.89	54.02
Solyc04g009030.2.1	Tomato	plastid	46.29	39.1
Solyc02g020940.2.1	Tomato	plastid	46.59	38.39
Solyc12g094640.1.1	Tomato	plastid	47.48	35.56
Solyc04g082630.2.1	Tomato	plastid	48.07	34.03

Protein Annotations

KEGG:00010+1.2.1.12	KEGG:00710+1.2.1.12	MapMan:2.1.1.4.1	Gene3D:3.30.360.10	Gene3D:3.40.50.720	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005975	GO:GO:0006006	GO:GO:0008150
GO:GO:0008152	GO:GO:0016491	GO:GO:0016620	GO:GO:0050661	GO:GO:0051287	GO:GO:0055114
InterPro:GlycerAld/Erythrose_P_DH	InterPro:GlycerAld_3-P_DH_AS	InterPro:GlycerAld_3-P_DH_NAD(P)-bd	InterPro:GlycerAld_3-P_DH_cat	InterPro:Glyceraldehyde-3-P_DH_1	UniProt:K4C8R4
InterPro:NAD(P)-bd_dom_sf	PFAM:PF00044	PFAM:PF02800	PIRSF:PIRSF000149	PRINTS:PR00078	ScanProsite:PS00071
PANTHER:PTHR10836	PANTHER:PTHR10836:SF63	SMART:SM00846	SUPFAM:SSF51735	SUPFAM:SSF55347	EnsemblPlantsGene:Solyc06g071920.2
EnsemblPlants:Solyc06g071920.2.1	TIGRFAMs:TIGR01534	UniParc:UPI0002765574	SEG:seg	:	:

Description

Glyceraldehyde-3-phosphate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:K4C8R4]

Coordinates

chr6:-:44308521..44312386

Molecular Weight (calculated)

36686.1 Da

IEP (calculated)

7.611

GRAVY (calculated)

-0.119

Length

337 amino acids

Sequence
(BLAST)

001: MGKIKIGING FGRIGRLVAR VALQRDDVEL VAVNDPFITV EYMTYMFKYD SVHGQWKNNE LKVKDEKTLL FGEKPVTVFG IRNPEEIPWA EAGAEYIVES
101: TGVFTDKDKA AAHLKGGAKK VVISAPSKDA PMFVVGVNEK EYKPDLNIVS NASCTTNCLA PLAKVIHDRF GIVEGLMTTV HSITATQKTV DGPSAKDWRG
201: GRAASFNIIP SSTGAAKAVG KVLPSLNGKL TGMSFRVPTV DVSVVDLTVR LEKEATYDEI KAAIKEESEG KLKGILGYTE DDVVSTDFLG DNRSSIFDAK
301: AGIALSKNFV KLVSWYDNEM GYSTRVVDLI KHMASVQ

Best Arabidopsis Sequence Match ( AT3G04120.1 )
(BLAST)

001: MADKKIRIGI NGFGRIGRLV ARVVLQRDDV ELVAVNDPFI TTEYMTYMFK YDSVHGQWKH NELKIKDEKT LLFGEKPVTV FGIRNPEDIP WAEAGADYVV
101: ESTGVFTDKD KAAAHLKGGA KKVVISAPSK DAPMFVVGVN EHEYKSDLDI VSNASCTTNC LAPLAKVIND RFGIVEGLMT TVHSITATQK TVDGPSMKDW
201: RGGRAASFNI IPSSTGAAKA VGKVLPALNG KLTGMSFRVP TVDVSVVDLT VRLEKAATYD EIKKAIKEES EGKLKGILGY TEDDVVSTDF VGDNRSSIFD
301: AKAGIALSDK FVKLVSWYDN EWGYSSRVVD LIVHMSKA

Arabidopsis Description

GAPC1Glyceraldehyde-3-phosphate dehydrogenase GAPC1, cytosolic [Source:UniProtKB/Swiss-Prot;Acc:P25858]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.