Factsheet for PGSC0003DMT400069357

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

cytosol: 22313117
extracellular: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g071920.2.1	Tomato	nucleus	99.11	99.11
PGSC0003DMT400039449	Potato	extracellular	93.18	93.18
PGSC0003DMT400044944	Potato	extracellular	89.32	89.05
Os04t0486600-01	Rice	plastid	88.43	88.43
Os02t0601300-01	Rice	plasma membrane	88.13	88.13
Zm00001d051001_P002	Maize	cytosol	86.65	86.65
EES05377	Sorghum	cytosol	86.35	86.35
PGSC0003DMT400010575	Potato	cytosol	86.35	86.35
TraesCS6D01G196300.2	Wheat	golgi, nucleus	86.35	86.35
TraesCS6A01G213700.1	Wheat	unclear	86.05	86.05
TraesCS7D01G309500.1	Wheat	cytosol	85.76	85.76
TraesCS7B01G213300.1	Wheat	golgi	85.76	85.76
Zm00001d049641_P001	Maize	plasma membrane, plastid	85.46	85.46
KXG24320	Sorghum	cytosol	85.16	85.16
KXG21112	Sorghum	cytosol	84.87	84.87
Os08t0126300-01	Rice	cytosol	84.87	84.87
KXG20851	Sorghum	cytosol	84.57	84.57
OQU77090	Sorghum	cytosol	54.6	82.88
Zm00001d035156_P003	Maize	cytosol	85.76	82.81
TraesCS6B01G243700.1	Wheat	endoplasmic reticulum	86.35	81.28
TraesCS7A01G313100.1	Wheat	cytosol	82.49	80.58
HORVU6Hr1G054520.3	Barley	cytosol, mitochondrion	85.76	79.4
TraesCS7B01G234400.1	Wheat	cytosol	80.71	79.3
PGSC0003DMT400044945	Potato	cytosol	41.54	79.1
HORVU7Hr1G074690.3	Barley	extracellular, plasma membrane	85.76	73.54
PGSC0003DMT400029242	Potato	plastid	72.7	58.47
Zm00001d017121_P001	Maize	plastid	86.65	57.25
PGSC0003DMT400030050	Potato	cytosol	45.99	38.85
PGSC0003DMT400025881	Potato	plastid	47.18	35.33
PGSC0003DMT400075608	Potato	cytosol, extracellular, plastid	46.88	35.11
PGSC0003DMT400087142	Potato	plastid	19.58	29.6

Protein Annotations

KEGG:00010+1.2.1.12	KEGG:00710+1.2.1.12	EntrezGene:102605742	MapMan:2.1.1.4.1	Gene3D:3.30.360.10	Gene3D:3.40.50.720
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005975	GO:GO:0006006
GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0016620	GO:GO:0050661	GO:GO:0051287
GO:GO:0055114	InterPro:GlycerAld/Erythrose_P_DH	InterPro:GlycerAld_3-P_DH_AS	InterPro:GlycerAld_3-P_DH_NAD(P)-bd	InterPro:GlycerAld_3-P_DH_cat	InterPro:Glyceraldehyde-3-P_DH_1
UniProt:M1CKC5	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00044	PFAM:PF02800	EnsemblPlantsGene:PGSC0003DMG400026978	PGSC:PGSC0003DMG400026978
EnsemblPlants:PGSC0003DMT400069357	PIRSF:PIRSF000149	PRINTS:PR00078	ScanProsite:PS00071	PANTHER:PTHR10836	PANTHER:PTHR10836:SF63
SMART:SM00846	SUPFAM:SSF51735	SUPFAM:SSF55347	TIGRFAMs:TIGR01534	UniParc:UPI000294F0E6	RefSeq:XP_006347401.1
SEG:seg	:	:	:	:	:

Description

NAD-dependent glyceraldehyde 3-P dehydrogenase [Source:PGSC_GENE;Acc:PGSC0003DMG400026978]

Coordinates

chr6:-:52786422..52790308

Molecular Weight (calculated)

36645.0 Da

IEP (calculated)

7.611

GRAVY (calculated)

-0.110

Length

337 amino acids

Sequence
(BLAST)

001: MGKIKIGING FGRIGRLVAR VALQRDDVEL VAVNDPFITV EYMTYMFKYD SVHGQWKNNE LKVKDEKTLL FGEKPVTVFG IRNPEEIPWA EAGAEYIVES
101: TGVFTDKDKA AAHLKGGAKK VVISAPSKDA PMFVVGVNEK EYKPDLNVVS NASCTTNCLA PLAKVIHDRF GIVEGLMTTV HSITATQKTV DGPSAKDWRG
201: GRAASFNIIP SSTGAAKAVG KVLPSLNGKL TGMSFRVPTV DVSVVDLTVR LEKEATYDEI KAAIKEESEG KLKGILGYTE DDVVSTDFIG DNRSSIFDAK
301: AGIALSKSFV KLVSWYDNEM GYSTRVVDLI KHMASVQ

Best Arabidopsis Sequence Match ( AT3G04120.1 )
(BLAST)

001: MADKKIRIGI NGFGRIGRLV ARVVLQRDDV ELVAVNDPFI TTEYMTYMFK YDSVHGQWKH NELKIKDEKT LLFGEKPVTV FGIRNPEDIP WAEAGADYVV
101: ESTGVFTDKD KAAAHLKGGA KKVVISAPSK DAPMFVVGVN EHEYKSDLDI VSNASCTTNC LAPLAKVIND RFGIVEGLMT TVHSITATQK TVDGPSMKDW
201: RGGRAASFNI IPSSTGAAKA VGKVLPALNG KLTGMSFRVP TVDVSVVDLT VRLEKAATYD EIKKAIKEES EGKLKGILGY TEDDVVSTDF VGDNRSSIFD
301: AKAGIALSDK FVKLVSWYDN EWGYSSRVVD LIVHMSKA

Arabidopsis Description

GAPC1Glyceraldehyde-3-phosphate dehydrogenase GAPC1, cytosolic [Source:UniProtKB/Swiss-Prot;Acc:P25858]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.