Factsheet for PGSC0003DMT400044945

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400006894	cytosol, cytosol, mitochondrion
PGSC0003DMT400072632	cytosol, cytosol, mitochondrion

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G13440.1	PGSC0003DMT400006894	AT2G36460.1	23316205
AT1G13440.1	PGSC0003DMT400072632	AT2G36460.1	23316205
AT1G13440.1	PGSC0003DMT400006894	AT2G36460.1	23316205
AT1G13440.1	PGSC0003DMT400072632	AT2G36460.1	23316205
AT3G04120.1	PGSC0003DMT400006894	AT2G36460.1	23316205
AT3G04120.1	PGSC0003DMT400072632	AT2G36460.1	23316205
AT3G04120.1	PGSC0003DMT400006894	AT2G36460.1	23316205
AT3G04120.1	PGSC0003DMT400072632	AT2G36460.1	23316205

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P02600_001	Banana	cytosol	19.21	58.62
KRH37937	Soybean	plastid	24.29	48.86
Bra019722.1-P	Field mustard	cytosol	72.88	43.88
Solyc05g014470.2.1	Tomato	extracellular, plastid	83.62	43.79
PGSC0003DMT400044944	Potato	extracellular	83.05	43.49
PGSC0003DMT400039449	Potato	extracellular	81.92	43.03
PGSC0003DMT400069357	Potato	cytosol	79.1	41.54
CDY49358	Canola	cytosol, mitochondrion	77.97	41.07
Bra040213.1-P	Field mustard	cytosol	77.97	40.83
CDX98100	Canola	cytosol, mitochondrion, peroxisome	72.88	40.57
Bra026904.1-P	Field mustard	cytosol	76.84	40.24
AT3G04120.1	Thale cress	cytosol	76.27	39.94
AT1G13440.1	Thale cress	cytosol	76.27	39.94
Bra040146.1-P	Field mustard	cytosol	76.27	39.94
Bra016729.1-P	Field mustard	cytosol	76.27	39.82
Os04t0486600-01	Rice	plastid	75.14	39.47
VIT_01s0010g02460.t01	Wine grape	cytosol	75.71	39.41
CDY42906	Canola	cytosol	77.97	39.09
CDX92059	Canola	cytosol, endoplasmic reticulum, peroxisome	76.84	39.08
Zm00001d051001_P002	Maize	cytosol	74.01	38.87
CDY26651	Canola	mitochondrion, peroxisome	72.88	38.74
CDX74199	Canola	endoplasmic reticulum	76.84	38.64
CDY21135	Canola	cytosol, mitochondrion, peroxisome, plastid	74.01	38.42
EES05377	Sorghum	cytosol	72.88	38.28
TraesCS6D01G196300.2	Wheat	golgi, nucleus	72.88	38.28
Os02t0601300-01	Rice	plasma membrane	72.88	38.28
PGSC0003DMT400010575	Potato	cytosol	72.32	37.98
TraesCS6A01G213700.1	Wheat	unclear	72.32	37.98
KXG21112	Sorghum	cytosol	71.19	37.39
Os08t0126300-01	Rice	cytosol	71.19	37.39
TraesCS7D01G309500.1	Wheat	cytosol	71.19	37.39
TraesCS7B01G213300.1	Wheat	golgi	71.19	37.39
KXG24320	Sorghum	cytosol	69.49	36.5
CDY50169	Canola	cytosol	76.27	36.29
CDY21098	Canola	cytosol	76.27	36.19
TraesCS6B01G243700.1	Wheat	endoplasmic reticulum	72.88	36.03
KXG20851	Sorghum	cytosol	68.36	35.91
Zm00001d049641_P001	Maize	plasma membrane, plastid	67.8	35.61
HORVU6Hr1G054520.3	Barley	cytosol, mitochondrion	72.32	35.16
CDY30032	Canola	cytosol	77.4	34.86
CDY29987	Canola	cytosol, peroxisome, plastid	74.01	34.84
TraesCS7B01G234400.1	Wheat	cytosol	67.23	34.69
Zm00001d035156_P003	Maize	cytosol	67.8	34.38
TraesCS7A01G313100.1	Wheat	cytosol	66.67	34.2
HORVU7Hr1G074690.3	Barley	extracellular, plasma membrane	71.19	32.06
CDY16090	Canola	cytoskeleton, cytosol, peroxisome	76.84	31.63
Zm00001d017121_P001	Maize	plastid	74.01	25.69
OQU77090	Sorghum	cytosol	31.64	25.23
PGSC0003DMT400029242	Potato	plastid	59.32	25.06
PGSC0003DMT400025881	Potato	plastid	34.46	13.56
PGSC0003DMT400075608	Potato	cytosol, extracellular, plastid	32.77	12.89
PGSC0003DMT400030050	Potato	cytosol	28.25	12.53
PGSC0003DMT400087142	Potato	plastid	7.34	5.83
GSMUA_Achr2P02610_001	Banana	cytosol	2.26	5.19

Protein Annotations

Gene3D:3.30.360.10	MapMan:50.1.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152
GO:GO:0016620	GO:GO:0055114	InterPro:GlycerAld/Erythrose_P_DH	InterPro:GlycerAld_3-P_DH_NAD(P)-bd	InterPro:GlycerAld_3-P_DH_cat	UniProt:M1BGW1
InterPro:NAD(P)-bd_dom_sf	PFAM:PF00044	PFAM:PF02800	EnsemblPlantsGene:PGSC0003DMG400017434	PGSC:PGSC0003DMG400017434	EnsemblPlants:PGSC0003DMT400044945
PRINTS:PR00078	PANTHER:PTHR10836	PANTHER:PTHR10836:SF63	SMART:SM00846	SUPFAM:SSF51735	SUPFAM:SSF55347
UniParc:UPI000296F2A8	:	:	:	:	:

Description

Glyceraldehyde 3-phosphate dehydrogenase [Source:PGSC_GENE;Acc:PGSC0003DMG400017434]

Coordinates

chr5:+:11946383..11947839

Molecular Weight (calculated)

19929.9 Da

IEP (calculated)

7.057

GRAVY (calculated)

-0.097

Length

177 amino acids

Sequence
(BLAST)

001: FDRIGRLVAR VALQRDDVEL VAVNNPFIST DYMTYMFKYD SVHGQWKHHE LKVKDEKTLL FGEKAVTVFG IRVPTGDVSV FDLTVRLEKE ALYDDIKAAI
101: KKESEGKLKG ILGYTEYDVV STDFVGDHRS SIYDAKAGIA LSKNFVKVVS CSCVIDLIYH MASVAGGFDA WRNRQPV

Best Arabidopsis Sequence Match ( AT1G13440.2 )
(BLAST)

001: MADKKIRIGI NGFGRIGRLV ARVVLQRDDV ELVAVNDPFI TTEYMTYMFK YDSVHGQWKH HELKVKDDKT LLFGEKPVTV FGIRNPEDIP WGEAGADFVV
101: ESTGVFTDKD KAAAHLKGGA KKVVISAPSK DAPMFVVGVN EHEFGIVEGL MTTVHSITAT QKTVDGPSMK DWRGGRAASF NIIPSSTGAA KAVGKVLPSL
201: NGKLTGMSFR VPTVDVSVVD LTVRLEKAAT YDEIKKAIKE ESEGKMKGIL GYTEDDVVST DFVGDNRSSI FDAKAGIALS DKFVKLVSWY DNEWGYSSRV
301: VDLIVHMSKA

Arabidopsis Description

GAPC2Glyceraldehyde-3-phosphate dehydrogenase GAPC2, cytosolic [Source:UniProtKB/Swiss-Prot;Acc:Q9FX54]
SUBAcon: [mitochondrion,peroxisome,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.