Factsheet for PGSC0003DMT400044944

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

cytosol 4
plastid 2
peroxisome 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

cytosol: 22313117
extracellular: 22313117
mitochondrion: 24351685
extracellular: 28248230

msms PMID: 28248230 doi

E Elagamey, K Narula, A Sinha, PR Aggarwal, S Ghosh, N Chakraborty, S Chakraborty

National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. aggarwal.pooja28@yahoo.com., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. arunima35@gmail.com., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. gayatrinarula@gmail.com., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. nchakraborty@nipgr.ac.in., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. schakraborty@nipgr.ac.in., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. sgblackpearl@gmail.com., National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi 110067, India. subhrac@hotmail.com.

msms PMID: 24351685 doi

F Salvato, JF Havelund, M Chen, RS Rao, A Rogowska-Wrzesinska, ON Jensen, DR Gang, JJ Thelen, IM Møller

Department of Biochemistry and Interdisciplinary Plant Group, University of Missouri, Columbia, Missouri 65211.

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400006894	cytosol, cytosol, mitochondrion
PGSC0003DMT400072632	cytosol, cytosol, mitochondrion

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G13440.1	PGSC0003DMT400006894	AT2G36460.1	23316205
AT1G13440.1	PGSC0003DMT400072632	AT2G36460.1	23316205
AT1G13440.1	PGSC0003DMT400006894	AT2G36460.1	23316205
AT1G13440.1	PGSC0003DMT400072632	AT2G36460.1	23316205
AT3G04120.1	PGSC0003DMT400006894	AT2G36460.1	23316205
AT3G04120.1	PGSC0003DMT400072632	AT2G36460.1	23316205
AT3G04120.1	PGSC0003DMT400006894	AT2G36460.1	23316205
AT3G04120.1	PGSC0003DMT400072632	AT2G36460.1	23316205

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g014470.2.1	Tomato	extracellular, plastid	99.41	99.41
CDY49358	Canola	cytosol, mitochondrion	92.31	92.86
Bra040146.1-P	Field mustard	cytosol	92.01	92.01
Bra040213.1-P	Field mustard	cytosol	92.01	92.01
Bra026904.1-P	Field mustard	cytosol	91.42	91.42
AT1G13440.1	Thale cress	cytosol	91.42	91.42
Bra019722.1-P	Field mustard	cytosol	78.99	90.82
PGSC0003DMT400039449	Potato	extracellular	90.53	90.8
AT3G04120.1	Thale cress	cytosol	90.53	90.53
Bra016729.1-P	Field mustard	cytosol	90.53	90.27
Os04t0486600-01	Rice	plastid	89.35	89.61
CDX92059	Canola	cytosol, endoplasmic reticulum, peroxisome	92.01	89.37
PGSC0003DMT400069357	Potato	cytosol	89.05	89.32
CDY42906	Canola	cytosol	92.01	88.1
CDX74199	Canola	endoplasmic reticulum	91.72	88.07
VIT_01s0010g02460.t01	Wine grape	cytosol	88.46	87.94
Os02t0601300-01	Rice	plasma membrane	86.98	87.24
TraesCS6D01G196300.2	Wheat	golgi, nucleus	85.5	85.76
Zm00001d051001_P002	Maize	cytosol	85.5	85.76
EES05377	Sorghum	cytosol	85.5	85.76
TraesCS6A01G213700.1	Wheat	unclear	85.21	85.46
TraesCS7B01G213300.1	Wheat	golgi	85.21	85.46
TraesCS7D01G309500.1	Wheat	cytosol	85.21	85.46
KXG24320	Sorghum	cytosol	85.21	85.46
KXG20851	Sorghum	cytosol	84.62	84.87
KXG21112	Sorghum	cytosol	84.62	84.87
Zm00001d049641_P001	Maize	plasma membrane, plastid	84.32	84.57
PGSC0003DMT400010575	Potato	cytosol	84.32	84.57
Os08t0126300-01	Rice	cytosol	84.32	84.57
CDX98100	Canola	cytosol, mitochondrion, peroxisome	78.99	83.96
PGSC0003DMT400044945	Potato	cytosol	43.49	83.05
OQU77090	Sorghum	cytosol	54.14	82.43
CDY50169	Canola	cytosol	90.53	82.26
CDY21098	Canola	cytosol	90.53	82.04
Zm00001d035156_P003	Maize	cytosol	84.02	81.38
CDY26651	Canola	mitochondrion, peroxisome	79.59	80.78
TraesCS6B01G243700.1	Wheat	endoplasmic reticulum	85.5	80.73
TraesCS7A01G313100.1	Wheat	cytosol	82.25	80.58
CDY21135	Canola	cytosol, mitochondrion, peroxisome, plastid	80.77	80.06
HORVU6Hr1G054520.3	Barley	cytosol, mitochondrion	86.09	79.95
TraesCS7B01G234400.1	Wheat	cytosol	80.47	79.3
CDY30032	Canola	cytosol	91.12	78.37
HORVU7Hr1G074690.3	Barley	extracellular, plasma membrane	85.5	73.54
CDY29987	Canola	cytosol, peroxisome, plastid	80.77	72.61
CDY16090	Canola	cytoskeleton, cytosol, peroxisome	91.12	71.63
GSMUA_Achr2P02610_001	Banana	cytosol	14.79	64.94
GSMUA_Achr2P02600_001	Banana	cytosol	10.95	63.79
PGSC0003DMT400029242	Potato	plastid	73.96	59.67
Zm00001d017121_P001	Maize	plastid	85.5	56.67
KRH37937	Soybean	plastid	14.5	55.68
PGSC0003DMT400030050	Potato	cytosol	45.86	38.85
PGSC0003DMT400025881	Potato	plastid	48.22	36.22
PGSC0003DMT400075608	Potato	cytosol, extracellular, plastid	47.93	36.0
PGSC0003DMT400087142	Potato	plastid	19.23	29.15

Protein Annotations

KEGG:00010+1.2.1.12	KEGG:00710+1.2.1.12	MapMan:2.1.1.4.1	Gene3D:3.30.360.10	Gene3D:3.40.50.720	ProteinID:AAB07758
ProteinID:AAB07758.1	ProteinID:AAM92008	ProteinID:AAM92008.1	ProteinID:ABB55366	ProteinID:ABB55366.1	ProteinID:ABB72804
ProteinID:ABB72804.1	ProteinID:ABB87128	ProteinID:ABB87128.1	EMBL:AF527779	EMBL:DQ241857	EMBL:DQ252489
EMBL:DQ268845	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005975
GO:GO:0006006	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0016620	GO:GO:0050661
GO:GO:0051287	GO:GO:0055114	InterPro:GlycerAld/Erythrose_P_DH	InterPro:GlycerAld_3-P_DH_AS	InterPro:GlycerAld_3-P_DH_NAD(P)-bd	InterPro:GlycerAld_3-P_DH_cat
InterPro:Glyceraldehyde-3-P_DH_1	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00044	PFAM:PF02800	EnsemblPlantsGene:PGSC0003DMG400017433	PGSC:PGSC0003DMG400017433
EnsemblPlants:PGSC0003DMT400044944	PIRSF:PIRSF000149	PRINTS:PR00078	ScanProsite:PS00071	PANTHER:PTHR10836	PANTHER:PTHR10836:SF63
UniProt:Q8LK04	SMART:SM00846	SUPFAM:SSF51735	SUPFAM:SSF55347	TIGRFAMs:TIGR01534	EMBL:U17005
UniParc:UPI000009D62A	SEG:seg	:	:	:	:

Description

Glyceraldehyde 3-phosphate dehydrogenase [Source:PGSC_GENE;Acc:PGSC0003DMG400017433]

Coordinates

chr5:+:11935504..11937965

Molecular Weight (calculated)

36648.9 Da

IEP (calculated)

6.798

GRAVY (calculated)

-0.107

Length

338 amino acids

Sequence
(BLAST)

001: MANGKIKIGI NGFGRIGRLV ARVALQRDDV ELVAVNDPFI STDYMTYMFK YDSVHGQWKH HELKVKDEKT LLFGEKAVTV FGIRNPEDIP WGEAGADFVV
101: ESTGVFTDKD KAAAHLKGGA KKVVISAPSK DAPMFVVGVN ENEYKPELDI VSNASCTTNC LAPLAKVIND RFGIVEGLMT TVHAMTATQK TVDGPSMKDW
201: RGGRAASFNI IPSSTGAAKA VGKVLPSLNG KLTGMAFRVP TADVSVVDLT VRLEKEASYE DIKAAIKEES EGKLKGILGY TEDDVVSTDF VGDSRSSIFD
301: AKAGIALSKN FVKLVSWYDN EWGYSSRVID LICHMAKA

Best Arabidopsis Sequence Match ( AT1G13440.1 )
(BLAST)

001: MADKKIRIGI NGFGRIGRLV ARVVLQRDDV ELVAVNDPFI TTEYMTYMFK YDSVHGQWKH HELKVKDDKT LLFGEKPVTV FGIRNPEDIP WGEAGADFVV
101: ESTGVFTDKD KAAAHLKGGA KKVVISAPSK DAPMFVVGVN EHEYKSDLDI VSNASCTTNC LAPLAKVIND RFGIVEGLMT TVHSITATQK TVDGPSMKDW
201: RGGRAASFNI IPSSTGAAKA VGKVLPSLNG KLTGMSFRVP TVDVSVVDLT VRLEKAATYD EIKKAIKEES EGKMKGILGY TEDDVVSTDF VGDNRSSIFD
301: AKAGIALSDK FVKLVSWYDN EWGYSSRVVD LIVHMSKA

Arabidopsis Description

GAPC2Glyceraldehyde-3-phosphate dehydrogenase GAPC2, cytosolic [Source:UniProtKB/Swiss-Prot;Acc:Q9FX54]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.