Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, extracellular
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
extracellular:
26928395
plasma membrane: 29385242 |
msms PMID:
26928395
doi
Agricultural and Environmental Proteomics, Department of Systems Biology, Technical University of Denmark , Søltofts Plads, Building 224, DK-2800 Kgs. Lyngby, Denmark., Enzyme and Protein Chemistry, Department of Systems Biology, Technical University of Denmark , Elektrovej, Building 375, DK-2800 Kgs. Lyngby, Denmark.
msms PMID:
29385242
doi
Biosystems Engineering, Fraunhofer Institute for Factory Operation and Automation, Joseph-von-Fraunhofer-Straße 1, 39106, Magdeburg, Germany., Institute of Biology/Applied Genetics, Dahlem Centre of Plant Sciences, Free University of Berlin, Albrecht-Thaer-Weg 6, 14195, Berlin, Germany., Leibniz Institute of Plant Genetics and Crop Plant Research, Corrensstraße 3, 06466, Stadt Seeland, Gatersleben, Germany., Leibniz Institute of Vegetable and Ornamental Crops, Theodor-Echtermeyer-Weg 1, 14979, Großbeeren, Germany., Technical University of Denmark, Søltofts Plads, Building 224, 2800, Kongens Lyngby, Denmark.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU3Hr1G088500.2 | cytosol, cytosol, mitochondrion |
| HORVU3Hr1G088540.1 | cytosol, cytosol, mitochondrion |
| HORVU3Hr1G088570.1 | cytosol, cytosol, mitochondrion |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G309500.1 | Wheat | cytosol | 85.24 | 99.41 |
| TraesCS7B01G213300.1 | Wheat | golgi | 85.24 | 99.41 |
| KXG24320 | Sorghum | cytosol | 81.17 | 94.66 |
| KXG20851 | Sorghum | cytosol | 81.17 | 94.66 |
| Zm00001d049641_P001 | Maize | plasma membrane, plastid | 80.92 | 94.36 |
| TraesCS7A01G313100.1 | Wheat | cytosol | 81.68 | 93.04 |
| Os08t0126300-01 | Rice | cytosol | 79.39 | 92.58 |
| Zm00001d035156_P003 | Maize | cytosol | 81.17 | 91.4 |
| OQU77090 | Sorghum | cytosol | 51.15 | 90.54 |
| CDY49358 | Canola | cytosol, mitochondrion | 75.57 | 88.39 |
| Bra016729.1-P | Field mustard | cytosol | 75.83 | 87.91 |
| Bra026904.1-P | Field mustard | cytosol | 75.57 | 87.87 |
| Bra040213.1-P | Field mustard | cytosol | 75.32 | 87.57 |
| AT3G04120.1 | Thale cress | cytosol | 75.06 | 87.28 |
| AT1G13440.1 | Thale cress | cytosol | 75.06 | 87.28 |
| Bra040146.1-P | Field mustard | cytosol | 74.55 | 86.69 |
| VIT_01s0010g02460.t01 | Wine grape | cytosol | 74.55 | 86.18 |
| Bra019722.1-P | Field mustard | cytosol | 64.38 | 86.05 |
| Solyc06g071920.2.1 | Tomato | nucleus | 73.79 | 86.05 |
| PGSC0003DMT400069357 | Potato | cytosol | 73.54 | 85.76 |
| KRH31426 | Soybean | endoplasmic reticulum | 74.05 | 85.59 |
| KRG97466 | Soybean | endoplasmic reticulum, nucleus | 74.05 | 85.59 |
| PGSC0003DMT400044944 | Potato | extracellular | 73.54 | 85.5 |
| Solyc05g014470.2.1 | Tomato | extracellular, plastid | 73.28 | 85.21 |
| CDX92059 | Canola | cytosol, endoplasmic reticulum, peroxisome | 75.32 | 85.06 |
| KRH63724 | Soybean | nucleus | 72.77 | 84.62 |
| CDY42906 | Canola | cytosol | 75.83 | 84.42 |
| KRH63725 | Soybean | endoplasmic reticulum, nucleus | 72.52 | 84.32 |
| HORVU2Hr1G123170.1 | Barley | cytosol | 8.14 | 84.21 |
| HORVU2Hr1G123240.1 | Barley | cytosol | 8.14 | 84.21 |
| CDX74199 | Canola | endoplasmic reticulum | 75.32 | 84.09 |
| KRH54227 | Soybean | endoplasmic reticulum, nucleus | 72.26 | 84.02 |
| KRH54234 | Soybean | endoplasmic reticulum, nucleus | 72.26 | 84.02 |
| VIT_17s0000g10430.t01 | Wine grape | extracellular | 72.01 | 83.98 |
| PGSC0003DMT400039449 | Potato | extracellular | 72.01 | 83.98 |
| Solyc03g111010.2.1 | Tomato | plastid | 71.76 | 83.68 |
| CDX98100 | Canola | cytosol, mitochondrion, peroxisome | 65.65 | 81.13 |
| CDY50169 | Canola | cytosol | 76.59 | 80.91 |
| CDY21098 | Canola | cytosol | 76.59 | 80.7 |
| HORVU6Hr1G054520.3 | Barley | cytosol, mitochondrion | 73.54 | 79.4 |
| CDY26651 | Canola | mitochondrion, peroxisome | 66.41 | 78.38 |
| CDY30032 | Canola | cytosol | 76.34 | 76.34 |
| CDY21135 | Canola | cytosol, mitochondrion, peroxisome, plastid | 66.16 | 76.25 |
| HORVU6Hr1G089870.1 | Barley | cytosol | 8.14 | 76.19 |
| PGSC0003DMT400044945 | Potato | cytosol | 32.06 | 71.19 |
| CDY29987 | Canola | cytosol, peroxisome, plastid | 67.18 | 70.21 |
| CDY16090 | Canola | cytoskeleton, cytosol, peroxisome | 76.59 | 70.0 |
| HORVU6Hr1G032070.2 | Barley | plastid | 62.34 | 58.89 |
| HORVU7Hr1G108580.4 | Barley | plastid | 53.44 | 51.22 |
| KRH37937 | Soybean | plastid | 11.45 | 51.14 |
| HORVU0Hr1G004830.6 | Barley | plastid | 41.22 | 39.71 |
| HORVU4Hr1G082700.4 | Barley | plastid | 41.98 | 37.16 |
| HORVU3Hr1G092890.1 | Barley | plastid | 28.5 | 19.38 |
Protein Annotations
| KEGG:00010+1.2.1.12 | KEGG:00710+1.2.1.12 | MapMan:2.1.1.4.1 | Gene3D:3.30.360.10 | Gene3D:3.40.50.720 | UniProt:A0A287WXA1 |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005975 | GO:GO:0006006 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016491 | GO:GO:0016620 | GO:GO:0050661 | GO:GO:0051287 |
| GO:GO:0055114 | InterPro:GlycerAld/Erythrose_P_DH | InterPro:GlycerAld_3-P_DH_AS | InterPro:GlycerAld_3-P_DH_NAD(P)-bd | InterPro:GlycerAld_3-P_DH_cat | InterPro:Glyceraldehyde-3-P_DH_1 |
| EnsemblPlantsGene:HORVU7Hr1G074690 | EnsemblPlants:HORVU7Hr1G074690.3 | InterPro:NAD(P)-bd_dom_sf | PFAM:PF00044 | PFAM:PF02800 | PIRSF:PIRSF000149 |
| PRINTS:PR00078 | ScanProsite:PS00071 | PANTHER:PTHR10836 | PANTHER:PTHR10836:SF58 | SMART:SM00846 | SUPFAM:SSF51735 |
| SUPFAM:SSF55347 | TIGRFAMs:TIGR01534 | UniParc:UPI000B480B4D | SEG:seg | : | : |
Description
Glyceraldehyde-3-phosphate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:A0A287WXA1]
Coordinates
chrchr7H:+:428679661..428682681
Molecular Weight (calculated)
42722.1 Da
IEP (calculated)
9.571
GRAVY (calculated)
-0.184
Length
393 amino acids
Sequence
(BLAST)
(BLAST)
001: PRYSISPFPL LGSWLYKTGR LNPPHLSISA SRHFPRPQRT SPPPSRVAAS VPLLRHGGKI KIGINGFGRI GRLVARVALQ SDDVELVAVN DPFITTEYMT
101: YMFKYDTVHG HWKHSDIKLK DDKTLLFGEK PVTVFGVRNP EEIPWGEAGA DYVVESTGVF TDKDKAAAHL KGGAKKVVIS APSKDAPMFV VGVNEDKYTS
201: DVNIVSNASC TTNCLAPLAK VINDNFGIIE GLMTTVHAIT ATQKTVDGPS SKDWRGGRAA SFNIIPSSTG AAKAVGKVLP ELNGKLTGMS FRVPTVDVSV
301: VDLTVRTEKA ASYDDIKKAI KAASEGKLKG IMGYVEEDLV STDFVGDSRS SIFDAKAGIA LNDHFVKLVS WYDNEWGYSN RVVDLIRHMA KTQ
101: YMFKYDTVHG HWKHSDIKLK DDKTLLFGEK PVTVFGVRNP EEIPWGEAGA DYVVESTGVF TDKDKAAAHL KGGAKKVVIS APSKDAPMFV VGVNEDKYTS
201: DVNIVSNASC TTNCLAPLAK VINDNFGIIE GLMTTVHAIT ATQKTVDGPS SKDWRGGRAA SFNIIPSSTG AAKAVGKVLP ELNGKLTGMS FRVPTVDVSV
301: VDLTVRTEKA ASYDDIKKAI KAASEGKLKG IMGYVEEDLV STDFVGDSRS SIFDAKAGIA LNDHFVKLVS WYDNEWGYSN RVVDLIRHMA KTQ
001: MADKKIRIGI NGFGRIGRLV ARVVLQRDDV ELVAVNDPFI TTEYMTYMFK YDSVHGQWKH NELKIKDEKT LLFGEKPVTV FGIRNPEDIP WAEAGADYVV
101: ESTGVFTDKD KAAAHLKGGA KKVVISAPSK DAPMFVVGVN EHEYKSDLDI VSNASCTTNC LAPLAKVIND RFGIVEGLMT TVHSITATQK TVDGPSMKDW
201: RGGRAASFNI IPSSTGAAKA VGKVLPALNG KLTGMSFRVP TVDVSVVDLT VRLEKAATYD EIKKAIKEES EGKLKGILGY TEDDVVSTDF VGDNRSSIFD
301: AKAGIALSDK FVKLVSWYDN EWGYSSRVVD LIVHMSKA
101: ESTGVFTDKD KAAAHLKGGA KKVVISAPSK DAPMFVVGVN EHEYKSDLDI VSNASCTTNC LAPLAKVIND RFGIVEGLMT TVHSITATQK TVDGPSMKDW
201: RGGRAASFNI IPSSTGAAKA VGKVLPALNG KLTGMSFRVP TVDVSVVDLT VRLEKAATYD EIKKAIKEES EGKLKGILGY TEDDVVSTDF VGDNRSSIFD
301: AKAGIALSDK FVKLVSWYDN EWGYSSRVVD LIVHMSKA
Arabidopsis Description
GAPC1Glyceraldehyde-3-phosphate dehydrogenase GAPC1, cytosolic [Source:UniProtKB/Swiss-Prot;Acc:P25858]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.