CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
mitochondrion 3
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY43716	cytosol, cytosol, mitochondrion

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G13440.1	CDY43716	AT2G36460.1	23316205
AT1G13440.1	CDY43716	AT2G36460.1	23316205
AT3G04120.1	CDY43716	AT2G36460.1	23316205
AT3G04120.1	CDY43716	AT2G36460.1	23316205

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra016729.1-P	Field mustard	cytosol	90.62	99.7
CDY50169	Canola	cytosol	97.32	97.58
AT3G04120.1	Thale cress	cytosol	87.67	96.75
CDY49358	Canola	cytosol, mitochondrion	87.13	96.73
AT1G13440.1	Thale cress	cytosol	87.13	96.15
CDX92059	Canola	cytosol, endoplasmic reticulum, peroxisome	88.2	94.54
CDX98100	Canola	cytosol, mitochondrion, peroxisome	79.89	93.71
CDX74199	Canola	endoplasmic reticulum	87.67	92.9
CDY42906	Canola	cytosol	87.4	92.35
Solyc05g014470.2.1	Tomato	extracellular, plastid	82.04	90.53
PGSC0003DMT400044944	Potato	extracellular	82.04	90.53
KRG97466	Soybean	endoplasmic reticulum, nucleus	82.31	90.29
KRH31426	Soybean	endoplasmic reticulum	81.77	89.71
VIT_17s0000g10430.t01	Wine grape	extracellular	80.97	89.61
Os04t0486600-01	Rice	plastid	80.7	89.32
CDY30032	Canola	cytosol	93.3	88.55
Os02t0601300-01	Rice	plasma membrane	79.62	88.13
TraesCS7B01G213300.1	Wheat	golgi	79.62	88.13
TraesCS7D01G309500.1	Wheat	cytosol	79.62	88.13
CDY26651	Canola	mitochondrion, peroxisome	78.55	87.99
KRH63724	Soybean	nucleus	79.62	87.87
KRH54234	Soybean	endoplasmic reticulum, nucleus	79.62	87.87
KRH63725	Soybean	endoplasmic reticulum, nucleus	79.36	87.57
EES05377	Sorghum	cytosol	79.09	87.54
KRH54227	Soybean	endoplasmic reticulum, nucleus	79.09	87.28
KXG24320	Sorghum	cytosol	78.82	87.24
Zm00001d051001_P002	Maize	cytosol	78.82	87.24
TraesCS6D01G196300.2	Wheat	golgi, nucleus	78.55	86.94
TraesCS6A01G213700.1	Wheat	unclear	78.28	86.65
KXG20851	Sorghum	cytosol	78.28	86.65
Zm00001d049641_P001	Maize	plasma membrane, plastid	78.02	86.35
KXG21112	Sorghum	cytosol	78.02	86.35
Os08t0126300-01	Rice	cytosol	77.75	86.05
CDY21135	Canola	cytosol, mitochondrion, peroxisome, plastid	78.02	85.34
OQU77090	Sorghum	cytosol	50.13	84.23
Zm00001d035156_P003	Maize	cytosol	78.28	83.67
TraesCS7A01G313100.1	Wheat	cytosol	76.94	83.19
TraesCS6B01G243700.1	Wheat	endoplasmic reticulum	79.09	82.4
TraesCS7B01G234400.1	Wheat	cytosol	73.73	80.17
CDY16090	Canola	cytoskeleton, cytosol, peroxisome	92.23	80.0
HORVU6Hr1G054520.3	Barley	cytosol, mitochondrion	78.02	79.95
CDY29987	Canola	cytosol, peroxisome, plastid	78.55	77.93
HORVU7Hr1G074690.3	Barley	extracellular, plasma membrane	80.7	76.59
PGSC0003DMT400044945	Potato	cytosol	36.19	76.27
GSMUA_Achr2P02600_001	Banana	cytosol	9.92	63.79
GSMUA_Achr2P02610_001	Banana	cytosol	12.87	62.34
CDY25342	Canola	plastid	65.15	58.55
CDY22281	Canola	plastid	65.15	58.0
Zm00001d017121_P001	Maize	plastid	79.09	57.84
CDX67990	Canola	plastid	65.15	57.72
CDX79324	Canola	plastid	64.88	57.48
CDY33343	Canola	plastid	64.61	56.57
CDY35080	Canola	plastid	64.61	56.57
KRH37937	Soybean	plastid	11.53	48.86
CDY69523	Canola	cytosol	43.43	40.3
CDY19412	Canola	plastid	42.9	40.1
CDX98028	Canola	plastid	42.9	40.1
CDY16038	Canola	plastid	42.36	39.6
CDY28536	Canola	plastid	40.21	39.47
CDX83635	Canola	plastid	40.21	39.47
CDY26599	Canola	plastid	42.09	39.35
CDY13649	Canola	plastid	39.68	38.95
CDY48981	Canola	plastid	37.53	38.04
CDY35800	Canola	plastid	44.24	36.83

Protein Annotations

KEGG:00010+1.2.1.12	KEGG:00710+1.2.1.12	MapMan:2.1.1.4.1	Gene3D:3.30.360.10	Gene3D:3.40.50.720	GO:A0A078G8S1
UniProt:A0A078G8S1	EnsemblPlants:CDY21098	ProteinID:CDY21098	ProteinID:CDY21098.1	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005975	GO:GO:0006006	GO:GO:0008150	GO:GO:0008152
GO:GO:0016491	GO:GO:0016620	GO:GO:0050661	GO:GO:0051287	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00015275001
InterPro:GlycerAld/Erythrose_P_DH	InterPro:GlycerAld_3-P_DH_AS	InterPro:GlycerAld_3-P_DH_NAD(P)-bd	InterPro:GlycerAld_3-P_DH_cat	InterPro:Glyceraldehyde-3-P_DH_1	InterPro:NAD(P)-bd_dom_sf
PFAM:PF00044	PFAM:PF02800	PIRSF:PIRSF000149	PRINTS:PR00078	ScanProsite:PS00071	PANTHER:PTHR10836
PANTHER:PTHR10836:SF63	MetaCyc:PWY-1042	MetaCyc:PWY-5484	MetaCyc:PWY-6901	MetaCyc:PWY-7003	SMART:SM00846
SUPFAM:SSF51735	SUPFAM:SSF55347	TIGRFAMs:TIGR01534	UniPathway:UPA00109	UniParc:UPI0004EDEB31	SEG:seg

Description

BnaA08g24270DGlyceraldehyde-3-phosphate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:A0A078G8S1]

Coordinates

chrLK032115:-:659360..663563

Molecular Weight (calculated)

41079.3 Da

IEP (calculated)

7.706

GRAVY (calculated)

-0.158

Length

373 amino acids

Sequence
(BLAST)

001: MHRCESYMNR PHQTLHSLDY LHARSLAFSL DLIAMADNKK IKIGINGFGR IGRLVARVIL QRNDVELVAV NDPFITTEYM TYMFKYDSVH GQWKHNELKI
101: KDEKTLLFGE KPVTVFGIRN PEEIPWGEAG ADFVVESTGV FTDKDKAAAH LKGGAKKVVI SAPSKDAPMF VVGVNEHEYK SDLNIVSNAS CTTNCLAPLA
201: KVINDRFGIV EGLMTTVHSI TATQKTVDGP SMKDWRGGRA ASFNIIPSST GAAKAVGKVL PQLNGKLTGM SFRVPTVDVS VVDLTVRLEK AATYDEIKKA
301: IKEESEGKLK GILGYTEDDV VSTDFVGDNR SSIFDAKAGI ALSDNFVKLV SWYDNEWGYS TRVVDLIIHM SKA

Best Arabidopsis Sequence Match ( AT3G04120.1 )
(BLAST)

001: MADKKIRIGI NGFGRIGRLV ARVVLQRDDV ELVAVNDPFI TTEYMTYMFK YDSVHGQWKH NELKIKDEKT LLFGEKPVTV FGIRNPEDIP WAEAGADYVV
101: ESTGVFTDKD KAAAHLKGGA KKVVISAPSK DAPMFVVGVN EHEYKSDLDI VSNASCTTNC LAPLAKVIND RFGIVEGLMT TVHSITATQK TVDGPSMKDW
201: RGGRAASFNI IPSSTGAAKA VGKVLPALNG KLTGMSFRVP TVDVSVVDLT VRLEKAATYD EIKKAIKEES EGKLKGILGY TEDDVVSTDF VGDNRSSIFD
301: AKAGIALSDK FVKLVSWYDN EWGYSSRVVD LIVHMSKA

Arabidopsis Description

GAPC1Glyceraldehyde-3-phosphate dehydrogenase GAPC1, cytosolic [Source:UniProtKB/Swiss-Prot;Acc:P25858]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.