CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 4
cytosol 1
extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
Predotar:	plastid
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH16972	cytosol, cytosol, mitochondrion
KRH72603	cytosol, cytosol, mitochondrion

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G13440.1	KRH16972	AT2G36460.1	23316205
AT1G13440.1	KRH72603	AT2G36460.1	23316205
AT1G13440.1	KRH16972	AT2G36460.1	23316205
AT1G13440.1	KRH72603	AT2G36460.1	23316205
AT3G04120.1	KRH16972	AT2G36460.1	23316205
AT3G04120.1	KRH72603	AT2G36460.1	23316205
AT3G04120.1	KRH16972	AT2G36460.1	23316205
AT3G04120.1	KRH72603	AT2G36460.1	23316205

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P02600_001	Banana	cytosol	25.0	37.93
PGSC0003DMT400044945	Potato	cytosol	48.86	24.29
KRH07324	Soybean	extracellular, nucleus	75.0	15.79
KRH66238	Soybean	plastid	75.0	15.79
PGSC0003DMT400044944	Potato	extracellular	55.68	14.5
Solyc05g014470.2.1	Tomato	extracellular, plastid	54.55	14.2
Os02t0601300-01	Rice	plasma membrane	52.27	13.65
KRG94350	Soybean	cytosol, mitochondrion	51.14	13.35
Os04t0486600-01	Rice	plastid	51.14	13.35
TraesCS7B01G213300.1	Wheat	golgi	51.14	13.35
TraesCS7D01G309500.1	Wheat	cytosol	51.14	13.35
Zm00001d049641_P001	Maize	plasma membrane, plastid	51.14	13.35
TraesCS6A01G213700.1	Wheat	unclear	50.0	13.06
TraesCS6D01G196300.2	Wheat	golgi, nucleus	50.0	13.06
KXG24320	Sorghum	cytosol	50.0	13.06
KXG21112	Sorghum	cytosol	50.0	13.06
KXG20851	Sorghum	cytosol	50.0	13.06
KRH57621	Soybean	endoplasmic reticulum	50.0	13.06
Bra026904.1-P	Field mustard	cytosol	50.0	13.02
KRH31426	Soybean	endoplasmic reticulum	50.0	12.94
CDY49358	Canola	cytosol, mitochondrion	48.86	12.8
Os08t0126300-01	Rice	cytosol	48.86	12.76
EES05377	Sorghum	cytosol	48.86	12.76
AT3G04120.1	Thale cress	cytosol	48.86	12.72
AT1G13440.1	Thale cress	cytosol	48.86	12.72
Bra040213.1-P	Field mustard	cytosol	48.86	12.72
Bra040146.1-P	Field mustard	cytosol	48.86	12.72
Bra016729.1-P	Field mustard	cytosol	48.86	12.68
KRG97466	Soybean	endoplasmic reticulum, nucleus	48.86	12.65
Zm00001d051001_P002	Maize	cytosol	47.73	12.46
KRH63725	Soybean	endoplasmic reticulum, nucleus	47.73	12.43
KRH63724	Soybean	nucleus	47.73	12.43
KRH54234	Soybean	endoplasmic reticulum, nucleus	47.73	12.43
KRH54227	Soybean	endoplasmic reticulum, nucleus	47.73	12.43
HORVU6Hr1G054520.3	Barley	cytosol, mitochondrion	51.14	12.36
CDX92059	Canola	cytosol, endoplasmic reticulum, peroxisome	48.86	12.36
Zm00001d035156_P003	Maize	cytosol	48.86	12.32
TraesCS6B01G243700.1	Wheat	endoplasmic reticulum	50.0	12.29
Bra019722.1-P	Field mustard	cytosol	40.91	12.24
CDX74199	Canola	endoplasmic reticulum	48.86	12.22
CDY42906	Canola	cytosol	48.86	12.18
CDY50169	Canola	cytosol	48.86	11.56
CDY21098	Canola	cytosol	48.86	11.53
HORVU7Hr1G074690.3	Barley	extracellular, plasma membrane	51.14	11.45
CDX98100	Canola	cytosol, mitochondrion, peroxisome	40.91	11.32
CDY26651	Canola	mitochondrion, peroxisome	42.05	11.11
TraesCS7B01G234400.1	Wheat	cytosol	43.18	11.08
CDY30032	Canola	cytosol	48.86	10.94
CDY21135	Canola	cytosol, mitochondrion, peroxisome, plastid	40.91	10.56
TraesCS7A01G313100.1	Wheat	cytosol	40.91	10.43
CDY16090	Canola	cytoskeleton, cytosol, peroxisome	50.0	10.23
CDY29987	Canola	cytosol, peroxisome, plastid	40.91	9.57
Zm00001d017121_P001	Maize	plastid	47.73	8.24
GSMUA_Achr2P02610_001	Banana	cytosol	6.82	7.79
KRH60895	Soybean	nucleus, plastid	32.95	6.43
KRH51576	Soybean	nucleus, plastid	32.95	6.4
KRH26225	Soybean	mitochondrion	22.73	6.31
KRH06774	Soybean	nucleus	28.41	6.2
KRG94751	Soybean	extracellular, nucleus	28.41	6.2
KRH08444	Soybean	cytosol	18.18	6.13
KRH70104	Soybean	plastid	7.95	2.54
KRH74912	Soybean	cytosol	3.41	2.14
OQU77090	Sorghum	cytosol	1.14	0.45

Protein Annotations

EMBL:ACUP02005567	EnsemblPlants:KRH37937	EnsemblPlantsGene:GLYMA_09G099700	Gene3D:3.30.360.10	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	GO:GO:0016620	GO:GO:0055114	InterPro:GlycerAld/Erythrose_P_DH	InterPro:GlycerAld_3-P_DH_cat
PANTHER:PTHR10836	PANTHER:PTHR10836:SF46	PFAM:PF02800	ProteinID:KRH37937	ProteinID:KRH37937.1	SUPFAM:SSF55347
UniParc:UPI0002960B3A	UniProt:K7LCW3	MapMan:35.1	:	:	:

Description

hypothetical protein

Coordinates

chr9:+:18118624..18119356

Molecular Weight (calculated)

9604.0 Da

IEP (calculated)

9.307

GRAVY (calculated)

0.673

Length

88 amino acids

Sequence
(BLAST)

1: MAFRVPTPNV FVVDFTCRLK KNASYEDVKA AIKSSIFNAM VGIALSASFV KLVSCNRVLD LIEHMALVGA QNGTPLVYVM LQLLLNSV

Best Arabidopsis Sequence Match ( AT1G79530.1 )
(BLAST)

001: MAFSSLLRSA ASYTVAAPRP DFFSSPASDH SKVLSSLGFS RNLKPSRFSS GISSSLQNGN ARSVQPIKAT ATEVPSAVRR SSSSGKTKVG INGFGRIGRL
101: VLRIATSRDD IEVVAVNDPF IDAKYMAYML KYDSTHGNFK GSINVIDDST LEINGKKVNV VSKRDPSEIP WADLGADYVV ESSGVFTTLS KAASHLKGGA
201: KKVIISAPSA DAPMFVVGVN EHTYQPNMDI VSNASCTTNC LAPLAKVVHE EFGILEGLMT TVHATTATQK TVDGPSMKDW RGGRGASQNI IPSSTGAAKA
301: VGKVLPELNG KLTGMAFRVP TSNVSVVDLT CRLEKGASYE DVKAAIKHAS EGPLKGILGY TDEDVVSNDF VGDSRSSIFD ANAGIGLSKS FVKLVSWYDN
401: EWGYSNRVLD LIEHMALVAA SH

Arabidopsis Description

GAPCP1Glyceraldehyde-3-phosphate dehydrogenase GAPCP1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SAJ6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.