CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH07324	Soybean	extracellular, nucleus	95.22	95.22
GSMUA_Achr5P00240_001	Banana	cytosol	45.22	90.43
CDY25342	Canola	plastid	79.9	80.48
AT1G79530.1	Thale cress	plastid	81.1	80.33
Bra008416.1-P	Field mustard	plastid	79.67	80.24
CDX67990	Canola	plastid	80.62	80.05
CDX79324	Canola	plastid	80.62	80.05
CDY22281	Canola	plastid	79.9	79.71
CDY33343	Canola	plastid	80.86	79.34
PGSC0003DMT400029242	Potato	plastid	79.43	79.24
CDY35080	Canola	plastid	80.62	79.11
AT1G16300.1	Thale cress	plastid	79.43	79.05
Bra026068.1-P	Field mustard	plastid	80.14	79.01
Solyc10g005510.2.1	Tomato	plastid	79.19	79.0
Bra003606.1-P	Field mustard	plastid	80.62	78.92
Os02t0171100-01	Rice	extracellular, plastid	76.32	77.62
TraesCS7A01G478100.2	Wheat	plastid	76.08	77.56
TraesCS7B01G380500.1	Wheat	plastid	75.84	77.51
VIT_19s0085g00600.t01	Wine grape	plastid	79.19	77.16
EES04595	Sorghum	plastid	76.08	77.0
TraesCS6D01G146900.1	Wheat	plastid	75.6	75.96
Zm00001d015383_P001	Maize	plastid	76.08	75.89
TraesCS6B01G185400.1	Wheat	plastid	75.12	75.48
TraesCS6A01G157500.1	Wheat	plastid	75.12	75.48
Os06t0666600-01	Rice	extracellular, plastid	74.64	75.18
HORVU6Hr1G032070.2	Barley	plastid	74.64	75.0
KRH37937	Soybean	plastid	15.79	75.0
KRH31426	Soybean	endoplasmic reticulum	59.81	73.53
KRG97466	Soybean	endoplasmic reticulum, nucleus	59.57	73.24
TraesCS7D01G465500.1	Wheat	plastid	75.36	72.92
Zm00001d053798_P004	Maize	plastid	71.77	72.29
KRH57621	Soybean	endoplasmic reticulum	57.89	71.81
KRH63725	Soybean	endoplasmic reticulum, nucleus	57.89	71.6
KRH63724	Soybean	nucleus	57.89	71.6
KRG94350	Soybean	cytosol, mitochondrion	57.66	71.51
KRH54234	Soybean	endoplasmic reticulum, nucleus	57.66	71.3
KRH54227	Soybean	endoplasmic reticulum, nucleus	57.42	71.01
HORVU7Hr1G108580.4	Barley	plastid	66.75	68.05
GSMUA_Achr5P00230_001	Banana	plastid	28.47	54.09
KRH08444	Soybean	cytosol	28.47	45.59
KRG94751	Soybean	extracellular, nucleus	43.06	44.66
KRH06774	Soybean	nucleus	42.82	44.42
KRH60895	Soybean	nucleus, plastid	44.98	41.69
KRH51576	Soybean	nucleus, plastid	44.98	41.5
KRH74912	Soybean	cytosol	13.64	40.71
GSMUA_Achr2P02630_001	Banana	endoplasmic reticulum, extracellular	12.44	39.1
KRH70104	Soybean	plastid	23.45	35.51
KRH26225	Soybean	mitochondrion	23.92	31.55

Protein Annotations

KEGG:00010+1.2.1.12	KEGG:00710+1.2.1.12	MapMan:3.12.4	Gene3D:3.30.360.10	Gene3D:3.40.50.720	EMBL:ACUP02001927
EnsemblPlantsGene:GLYMA_03G092700	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005975
GO:GO:0006006	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0016620	GO:GO:0050661
GO:GO:0051287	GO:GO:0055114	InterPro:GlycerAld/Erythrose_P_DH	InterPro:GlycerAld_3-P_DH_AS	InterPro:GlycerAld_3-P_DH_NAD(P)-bd	InterPro:GlycerAld_3-P_DH_cat
InterPro:Glyceraldehyde-3-P_DH_1	UniProt:I1JMB4	EnsemblPlants:KRH66238	ProteinID:KRH66238	ProteinID:KRH66238.1	InterPro:NAD(P)-bd_dom_sf
PFAM:PF00044	PFAM:PF02800	PRINTS:PR00078	ScanProsite:PS00071	PANTHER:PTHR10836	PANTHER:PTHR10836:SF46
MetaCyc:PWY-1042	MetaCyc:PWY-5484	MetaCyc:PWY-6901	MetaCyc:PWY-7003	SMART:SM00846	SUPFAM:SSF51735
SUPFAM:SSF55347	TIGRFAMs:TIGR01534	UniParc:UPI0001CAA357	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr3:-:27384348..27390248

Molecular Weight (calculated)

44658.3 Da

IEP (calculated)

8.726

GRAVY (calculated)

-0.099

Length

418 amino acids

Sequence
(BLAST)

001: MAASSLLRSA LLAPSSCDRP KVYTNASSSN LKSKGLHSSI FGTSIQCDSL VLQNCNGRGI QPIKATATEI PLPTQQSRST GKTRVGINGF GRIGRLVLRV
101: ATFRDDVDVV AINDPFIDAK YMAYMFKYDS THGPFKGSIN ILDDSTLEIN GKHVKVVSKR DPAEIPWSDF GADYVIESSG VFTTVEKASS HLKAGAKKVV
201: ISAPSADAPM FVVGVNEKTY NPKMDIVSNA SCTTNCLAPL AKVVNEEFGI VEGLMTTVHA TTATQKTVDG PSMKDWRGGR GAAQNIIPSS TGAAKAVGKV
301: LPELNGKLTG MAFRVPTPNV SVVDLTCRLK KNASYEDVKA AIKYASEGPL KGILGYTDED VVSNDFVGDS RSSIFDAKAG IALSASFVKL VSWYDNEWGY
401: SNRVLDLIEH MALVGAQN

Best Arabidopsis Sequence Match ( AT1G79530.1 )
(BLAST)

001: MAFSSLLRSA ASYTVAAPRP DFFSSPASDH SKVLSSLGFS RNLKPSRFSS GISSSLQNGN ARSVQPIKAT ATEVPSAVRR SSSSGKTKVG INGFGRIGRL
101: VLRIATSRDD IEVVAVNDPF IDAKYMAYML KYDSTHGNFK GSINVIDDST LEINGKKVNV VSKRDPSEIP WADLGADYVV ESSGVFTTLS KAASHLKGGA
201: KKVIISAPSA DAPMFVVGVN EHTYQPNMDI VSNASCTTNC LAPLAKVVHE EFGILEGLMT TVHATTATQK TVDGPSMKDW RGGRGASQNI IPSSTGAAKA
301: VGKVLPELNG KLTGMAFRVP TSNVSVVDLT CRLEKGASYE DVKAAIKHAS EGPLKGILGY TDEDVVSNDF VGDSRSSIFD ANAGIGLSKS FVKLVSWYDN
401: EWGYSNRVLD LIEHMALVAA SH

Arabidopsis Description

GAPCP1Glyceraldehyde-3-phosphate dehydrogenase GAPCP1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SAJ6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.