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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 7
  • mitochondrion 2
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:mitochondrion, plastid
BaCelLo:plastid
ChloroP:plastid
iPSORT:mitochondrion
MultiLoc:plastid
Predotar:plastid
PProwler:mitochondrion
TargetP:plastid
WoLF PSORT:plastid
YLoc:plastid
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY35080 Canola plastid 94.05 92.72
CDY33343 Canola plastid 93.81 92.49
Bra026068.1-P Field mustard plastid 93.1 92.22
GSMUA_Achr5P00240_001 Banana cytosol 44.76 89.95
AT1G79530.1 Thale cress plastid 86.9 86.49
Solyc10g005510.2.1 Tomato plastid 80.0 80.19
KRH66238 Soybean plastid 79.05 79.43
PGSC0003DMT400029242 Potato plastid 79.05 79.24
KRH07324 Soybean extracellular, nucleus 78.57 78.95
TraesCS7A01G478100.2 Wheat plastid 76.9 78.78
TraesCS7B01G380500.1 Wheat plastid 76.67 78.73
Os02t0171100-01 Rice extracellular, plastid 75.95 77.62
EES04595 Sorghum plastid 76.19 77.48
TraesCS6D01G146900.1 Wheat plastid 76.43 77.16
TraesCS6A01G157500.1 Wheat plastid 76.19 76.92
Os06t0666600-01 Rice extracellular, plastid 75.95 76.87
VIT_19s0085g00600.t01 Wine grape plastid 78.33 76.69
Zm00001d015383_P001 Maize plastid 76.43 76.61
TraesCS6B01G185400.1 Wheat plastid 75.71 76.44
HORVU6Hr1G032070.2 Barley plastid 75.48 76.2
TraesCS7D01G465500.1 Wheat plastid 76.9 74.77
Zm00001d053798_P004 Maize plastid 71.9 72.77
AT3G04120.1 Thale cress cytosol 57.38 71.3
AT1G13440.1 Thale cress cytosol 57.14 71.01
HORVU7Hr1G108580.4 Barley plastid 67.14 68.78
GSMUA_Achr5P00230_001 Banana plastid 29.52 56.36
GSMUA_Achr2P02630_001 Banana endoplasmic reticulum, extracellular 13.57 42.86
AT3G26650.1 Thale cress plastid 39.05 41.41
AT1G42970.1 Thale cress plastid 42.86 40.27
AT1G12900.5 Thale cress endoplasmic reticulum 41.43 39.46
Protein Annotations
KEGG:00010+1.2.1.12KEGG:00710+1.2.1.12MapMan:3.12.4Gene3D:3.30.360.10Gene3D:3.40.50.720EntrezGene:838199
ProteinID:AAD34682.1ProteinID:AEE29433.1ArrayExpress:AT1G16300EnsemblPlantsGene:AT1G16300RefSeq:AT1G16300TAIR:AT1G16300
RefSeq:AT1G16300-TAIR-GEnsemblPlants:AT1G16300.1TAIR:AT1G16300.1EMBL:AY088762Unigene:At.41889EMBL:BT002867
EMBL:BT021096Symbol:GAPCP-2GO:GO:0000166GO:GO:0003674GO:GO:0003824GO:GO:0004365
GO:GO:0005488GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005975
GO:GO:0006006GO:GO:0006091GO:GO:0006096GO:GO:0006139GO:GO:0007275GO:GO:0008150
GO:GO:0008152GO:GO:0009056GO:GO:0009058GO:GO:0009507GO:GO:0009536GO:GO:0009570
GO:GO:0009987GO:GO:0016491GO:GO:0016620GO:GO:0050661GO:GO:0051287GO:GO:0055114
GO:GO:0080022GO:GO:0080144InterPro:GlycerAld/Erythrose_P_DHInterPro:GlycerAld_3-P_DH_ASInterPro:GlycerAld_3-P_DH_NAD(P)-bdInterPro:GlycerAld_3-P_DH_cat
InterPro:Glyceraldehyde-3-P_DH_1InterPro:NAD(P)-bd_dom_sfRefSeq:NP_173080.1PFAM:PF00044PFAM:PF02800PO:PO:0000293
PRINTS:PR00078ScanProsite:PS00071PANTHER:PTHR10836PANTHER:PTHR10836:SF46UniProt:Q5E924SMART:SM00846
SUPFAM:SSF51735SUPFAM:SSF55347TIGRFAMs:TIGR01534UniParc:UPI0000162DA9SEG:seg:
Description
GAPCP2Glyceraldehyde-3-phosphate dehydrogenase GAPCP2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q5E924]
Coordinates
chr1:+:5574257..5577622
Molecular Weight (calculated)
44848.3 Da
IEP (calculated)
8.927
GRAVY (calculated)
-0.108
Length
420 amino acids
Sequence
(BLAST)
001: MALSSLLRSA ATSAAAPRVE LYPSSSYNHS QVTSSLGFSH SLTSSRFSGA AVSTGKYNAK RVQPIKATAT EAPPAVHRSR SSGKTKVGIN GFGRIGRLVL
101: RIATFRDDIE VVAVNDPFID AKYMAYMFKY DSTHGNYKGT INVIDDSTLE INGKQVKVVS KRDPAEIPWA DLGAEYVVES SGVFTTVGQA SSHLKGGAKK
201: VIISAPSADA PMFVVGVNEK TYLPNMDIVS NASCTTNCLA PLAKVVHEEF GILEGLMTTV HATTATQKTV DGPSMKDWRG GRGASQNIIP SSTGAAKAVG
301: KVLPELNGKL TGMAFRVPTP NVSVVDLTCR LEKDASYEDV KAAIKFASEG PLRGILGYTE EDVVSNDFLG DSRSSIFDAN AGIGLSKSFM KLVSWYDNEW
401: GYSNRVLDLI EHMALVAASR
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.