Factsheet for TraesCS6B01G185400.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 16595579
plastid: 18419817
golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 18419817 doi

FM Dupont

Western Regional Research Center, United States Department of Agriculture, Agricultural Research Service, 800 Buchanan Street, Albany, CA 94710K, USA.

msms PMID: 16595579 doi

Y Balmer, WH Vensel, FM DuPont, BB Buchanan, WJ Hurkman

Department of Plant and Microbial Biology, University of California, 111 Koshland Hall, Berkeley, CA 94720, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G146900.1	Wheat	plastid	98.08	98.08
TraesCS6A01G157500.1	Wheat	plastid	97.12	97.12
HORVU6Hr1G032070.2	Barley	plastid	95.67	95.67
EES04595	Sorghum	plastid	91.83	92.49
GSMUA_Achr5P00240_001	Banana	cytosol	45.43	90.43
Os02t0171100-01	Rice	extracellular, plastid	88.94	90.02
Zm00001d015383_P001	Maize	plastid	90.38	89.74
TraesCS7B01G380500.1	Wheat	plastid	84.38	85.82
Zm00001d053798_P004	Maize	plastid	83.89	84.1
Bra008416.1-P	Field mustard	plastid	77.16	77.35
CDY25342	Canola	plastid	76.92	77.11
AT1G79530.1	Thale cress	plastid	78.12	77.01
CDX79324	Canola	plastid	77.88	76.96
Solyc10g005510.2.1	Tomato	plastid	77.4	76.85
CDY22281	Canola	plastid	77.16	76.61
CDX67990	Canola	plastid	77.16	76.25
PGSC0003DMT400029242	Potato	plastid	76.68	76.13
Bra026068.1-P	Field mustard	plastid	77.4	75.94
AT1G16300.1	Thale cress	plastid	76.44	75.71
KRH66238	Soybean	plastid	75.48	75.12
CDY33343	Canola	plastid	76.92	75.12
CDY35080	Canola	plastid	76.92	75.12
Bra003606.1-P	Field mustard	plastid	76.92	74.94
KRH07324	Soybean	extracellular, nucleus	74.76	74.4
VIT_19s0085g00600.t01	Wine grape	plastid	76.2	73.89
TraesCS7B01G213300.1	Wheat	golgi	58.89	72.7
TraesCS6B01G243700.1	Wheat	endoplasmic reticulum	56.25	65.36
TraesCS7B01G234400.1	Wheat	cytosol	52.88	64.14
GSMUA_Achr5P00230_001	Banana	plastid	30.29	57.27
TraesCS2B01G342200.1	Wheat	plastid	41.59	43.14
GSMUA_Achr2P02630_001	Banana	endoplasmic reticulum, extracellular	13.22	41.35
TraesCS4B01G323000.1	Wheat	plastid	43.27	40.54
TraesCS3B01G076300.1	Wheat	plastid	31.97	22.5

Protein Annotations

KEGG:00010+1.2.1.12	KEGG:00710+1.2.1.12	MapMan:3.12.4	Gene3D:3.30.360.10	Gene3D:3.40.50.720	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005975	GO:GO:0006006	GO:GO:0008150
GO:GO:0008152	GO:GO:0016620	GO:GO:0050661	GO:GO:0051287	GO:GO:0055114	InterPro:GlycerAld/Erythrose_P_DH
InterPro:GlycerAld_3-P_DH_AS	InterPro:GlycerAld_3-P_DH_NAD(P)-bd	InterPro:GlycerAld_3-P_DH_cat	InterPro:Glyceraldehyde-3-P_DH_1	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00044
PFAM:PF02800	PRINTS:PR00078	ScanProsite:PS00071	PANTHER:PTHR10836	PANTHER:PTHR10836:SF46	SMART:SM00846
SUPFAM:SSF51735	SUPFAM:SSF55347	TIGRFAMs:TIGR01534	EnsemblPlantsGene:TraesCS6B01G185400	EnsemblPlants:TraesCS6B01G185400.1	SEG:seg

Description

No Description!

Coordinates

chr6B:-:210780861..210786221

Molecular Weight (calculated)

43800.2 Da

IEP (calculated)

7.533

GRAVY (calculated)

0.007

Length

416 amino acids

Sequence
(BLAST)

001: MAALSVPLRT AAALSSSGAG SRAVADPSKA SCVRSTGSAH FGCSFPSIVA SSSSVRNIEP LRAIATQAPP AVPQYSSGEK TKVGINGFGR IGRLVLRIAI
101: SRDDIEVVAV NDPFIDAKYM AYMFKYDSTH GPFKGSINVV DDSTLEINGK KITITSKRDP AEIPWGNFGV DYVVESSGVF TTIDKASVHL KGGAKKVVIS
201: APSADAPMFV VGVNEMSYDP KMNVVSNASC TTNCLAPLAK VVHEEFGILE GLMTTVHATT ATQKTVDGPS MKDWRGGRGA GQNIIPSSTG AAKAVGKVLP
301: ELNGKLTGMA FRVPTPNVSV VDLTCRLEKS ASYDDVKAAI KAASEGALEG ILGYTDEDVV SNDFVGDTRS SIFDANAGMG LSSSFMKLVS WYDNEWGYSN
401: RVLDLIAHMA LVTAKH

Best Arabidopsis Sequence Match ( AT1G79530.1 )
(BLAST)

001: MAFSSLLRSA ASYTVAAPRP DFFSSPASDH SKVLSSLGFS RNLKPSRFSS GISSSLQNGN ARSVQPIKAT ATEVPSAVRR SSSSGKTKVG INGFGRIGRL
101: VLRIATSRDD IEVVAVNDPF IDAKYMAYML KYDSTHGNFK GSINVIDDST LEINGKKVNV VSKRDPSEIP WADLGADYVV ESSGVFTTLS KAASHLKGGA
201: KKVIISAPSA DAPMFVVGVN EHTYQPNMDI VSNASCTTNC LAPLAKVVHE EFGILEGLMT TVHATTATQK TVDGPSMKDW RGGRGASQNI IPSSTGAAKA
301: VGKVLPELNG KLTGMAFRVP TSNVSVVDLT CRLEKGASYE DVKAAIKHAS EGPLKGILGY TDEDVVSNDF VGDSRSSIFD ANAGIGLSKS FVKLVSWYDN
401: EWGYSNRVLD LIEHMALVAA SH

Arabidopsis Description

GAPCP1Glyceraldehyde-3-phosphate dehydrogenase GAPCP1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SAJ6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.