Factsheet for VIT_19s0085g00600.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P00240_001	Banana	cytosol	44.52	91.39
Solyc10g005510.2.1	Tomato	plastid	79.49	81.38
PGSC0003DMT400029242	Potato	plastid	79.25	81.15
Bra008416.1-P	Field mustard	plastid	78.09	80.72
CDY25342	Canola	plastid	77.62	80.24
CDY22281	Canola	plastid	78.09	79.95
KRH07324	Soybean	extracellular, nucleus	77.86	79.9
AT1G79530.1	Thale cress	plastid	78.32	79.62
KRH66238	Soybean	plastid	77.16	79.19
Bra026068.1-P	Field mustard	plastid	78.09	79.01
EES04595	Sorghum	plastid	75.99	78.93
CDY35080	Canola	plastid	78.32	78.87
CDX67990	Canola	plastid	77.39	78.86
CDX79324	Canola	plastid	77.39	78.86
CDY33343	Canola	plastid	78.09	78.64
Os02t0171100-01	Rice	extracellular, plastid	75.06	78.35
AT1G16300.1	Thale cress	plastid	76.69	78.33
Os06t0666600-01	Rice	extracellular, plastid	75.52	78.07
TraesCS7B01G380500.1	Wheat	plastid	74.13	77.75
Bra003606.1-P	Field mustard	plastid	77.16	77.52
TraesCS7A01G478100.2	Wheat	plastid	73.89	77.32
TraesCS6D01G146900.1	Wheat	plastid	74.83	77.16
TraesCS6A01G157500.1	Wheat	plastid	74.36	76.68
HORVU6Hr1G032070.2	Barley	plastid	74.13	76.44
TraesCS6B01G185400.1	Wheat	plastid	73.89	76.2
TraesCS7D01G465500.1	Wheat	plastid	74.13	73.61
VIT_17s0000g10430.t01	Wine grape	extracellular	57.58	73.29
VIT_01s0010g02460.t01	Wine grape	cytosol	57.58	72.65
VIT_14s0171g00440.t01	Wine grape	cytosol	56.18	71.51
HORVU7Hr1G108580.4	Barley	plastid	65.03	68.05
VIT_14s0006g03030.t01	Wine grape	extracellular	13.99	66.67
GSMUA_Achr5P00230_001	Banana	plastid	30.07	58.64
Zm00001d019945_P001	Maize	plastid	11.65	45.05
VIT_14s0068g00680.t01	Wine grape	plastid	40.56	43.07
VIT_18s0122g00960.t01	Wine grape	plastid	43.82	41.5
GSMUA_Achr2P02630_001	Banana	endoplasmic reticulum, extracellular	12.12	39.1
VIT_18s0089g00560.t01	Wine grape	mitochondrion, peroxisome, plastid	14.69	32.81
VIT_18s0089g00590.t01	Wine grape	plastid	21.21	23.16

Protein Annotations

KEGG:00010+1.2.1.12	KEGG:00710+1.2.1.12	EntrezGene:100265689	wikigene:100265689	MapMan:3.12.4	Gene3D:3.30.360.10
Gene3D:3.40.50.720	ProteinID:CBI24168	ProteinID:CBI24168.3	UniProt:D7T0U8	EMBL:FN595503	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005975	GO:GO:0006006	GO:GO:0008150
GO:GO:0008152	GO:GO:0016491	GO:GO:0016620	GO:GO:0050661	GO:GO:0051287	GO:GO:0055114
InterPro:GlycerAld/Erythrose_P_DH	InterPro:GlycerAld_3-P_DH_AS	InterPro:GlycerAld_3-P_DH_NAD(P)-bd	InterPro:GlycerAld_3-P_DH_cat	InterPro:Glyceraldehyde-3-P_DH_1	EntrezGene:LOC100265689
wikigene:LOC100265689	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00044	PFAM:PF02800	PRINTS:PR00078	ScanProsite:PS00071
PANTHER:PTHR10836	PANTHER:PTHR10836:SF46	SMART:SM00846	SUPFAM:SSF51735	SUPFAM:SSF55347	TIGR:TC56963
TIGRFAMs:TIGR01534	UniParc:UPI00015CCCC0	ArrayExpress:VIT_19s0085g00600	EnsemblPlantsGene:VIT_19s0085g00600	EnsemblPlants:VIT_19s0085g00600.t01	unigene:Vvi.1802
RefSeq:XP_002263263	RefSeq:XP_002263263.1	SEG:seg	:	:	:

Description

Glyceraldehyde-3-phosphate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:D7T0U8]

Coordinates

chr19:+:23001191..23009729

Molecular Weight (calculated)

45575.4 Da

IEP (calculated)

8.777

GRAVY (calculated)

-0.067

Length

429 amino acids

Sequence
(BLAST)

001: MALYSLFRSA PSAAAAAAAT VVDSSRPSDR CKVSCIGFNS NADSLKVQTT IFGTPCIGNS SSLQKCSARS LQPIKATATE LPPTVQKSWS SGQTKIGING
101: FGRIGRLVLR VATSRDDIDV VAVNDPFVDA KYMAYMFKYD STHGVFKGTI KVLDESTLEI NGKQIKVTSK RDPSEIPWGD YGIDYVVESS GVFTTTEKAS
201: AHIKGGAKKV VISAPSADAP MFVVGVNETS YKPSMNIVSN ASCTTNCLAP LAKVVHEEFG IVEGLMTTVH ATTATQKTVD GPSMKDWRGG RGASQNIIPS
301: STGAAKAVGK VLPELNGKLT GMAFRVPTPN VSVVDLTCRL KKSATYEDVK AAVKYASEGP LKGILGYTDE DVVSNDFVGD SRSSIFDAKA GIGLSASFMK
401: LVAWYDNEWG YSNRVLDLIE HMALVAASK

Best Arabidopsis Sequence Match ( AT1G79530.1 )
(BLAST)

001: MAFSSLLRSA ASYTVAAPRP DFFSSPASDH SKVLSSLGFS RNLKPSRFSS GISSSLQNGN ARSVQPIKAT ATEVPSAVRR SSSSGKTKVG INGFGRIGRL
101: VLRIATSRDD IEVVAVNDPF IDAKYMAYML KYDSTHGNFK GSINVIDDST LEINGKKVNV VSKRDPSEIP WADLGADYVV ESSGVFTTLS KAASHLKGGA
201: KKVIISAPSA DAPMFVVGVN EHTYQPNMDI VSNASCTTNC LAPLAKVVHE EFGILEGLMT TVHATTATQK TVDGPSMKDW RGGRGASQNI IPSSTGAAKA
301: VGKVLPELNG KLTGMAFRVP TSNVSVVDLT CRLEKGASYE DVKAAIKHAS EGPLKGILGY TDEDVVSNDF VGDSRSSIFD ANAGIGLSKS FVKLVSWYDN
401: EWGYSNRVLD LIEHMALVAA SH

Arabidopsis Description

GAPCP1Glyceraldehyde-3-phosphate dehydrogenase GAPCP1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SAJ6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.