Factsheet for VIT_01s0010g02460.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG97466	Soybean	endoplasmic reticulum, nucleus	91.47	91.47
KRH31426	Soybean	endoplasmic reticulum	91.47	91.47
Os04t0486600-01	Rice	plastid	90.59	91.39
VIT_17s0000g10430.t01	Wine grape	extracellular	89.41	90.21
KRH54227	Soybean	endoplasmic reticulum, nucleus	88.82	89.35
KRH63724	Soybean	nucleus	88.82	89.35
KRH63725	Soybean	endoplasmic reticulum, nucleus	88.82	89.35
TraesCS6D01G196300.2	Wheat	golgi, nucleus	88.53	89.32
KRH54234	Soybean	endoplasmic reticulum, nucleus	88.53	89.05
Zm00001d051001_P002	Maize	cytosol	88.24	89.02
TraesCS6A01G213700.1	Wheat	unclear	88.24	89.02
EES05377	Sorghum	cytosol	87.94	88.72
Os02t0601300-01	Rice	plasma membrane	87.94	88.72
PGSC0003DMT400044944	Potato	extracellular	87.94	88.46
Solyc05g014470.2.1	Tomato	extracellular, plastid	87.65	88.17
KXG21112	Sorghum	cytosol	87.35	88.13
VIT_14s0171g00440.t01	Wine grape	cytosol	87.06	87.83
Os08t0126300-01	Rice	cytosol	86.18	86.94
TraesCS7D01G309500.1	Wheat	cytosol	86.18	86.94
TraesCS7B01G213300.1	Wheat	golgi	86.18	86.94
KXG24320	Sorghum	cytosol	85.29	86.05
KXG20851	Sorghum	cytosol	85.29	86.05
Zm00001d049641_P001	Maize	plasma membrane, plastid	84.71	85.46
OQU77090	Sorghum	cytosol	55.29	84.68
TraesCS6B01G243700.1	Wheat	endoplasmic reticulum	88.53	84.08
TraesCS7B01G234400.1	Wheat	cytosol	83.82	83.09
Zm00001d035156_P003	Maize	cytosol	84.71	82.52
HORVU6Hr1G054520.3	Barley	cytosol, mitochondrion	88.24	82.42
TraesCS7A01G313100.1	Wheat	cytosol	83.53	82.32
PGSC0003DMT400044945	Potato	cytosol	39.41	75.71
HORVU7Hr1G074690.3	Barley	extracellular, plasma membrane	86.18	74.55
VIT_14s0006g03030.t01	Wine grape	extracellular	19.41	73.33
GSMUA_Achr2P02600_001	Banana	cytosol	11.76	68.97
GSMUA_Achr2P02610_001	Banana	cytosol	13.53	59.74
Zm00001d017121_P001	Maize	plastid	88.24	58.82
VIT_19s0085g00600.t01	Wine grape	plastid	72.65	57.58
VIT_14s0068g00680.t01	Wine grape	plastid	45.59	38.37
VIT_18s0122g00960.t01	Wine grape	plastid	47.65	35.76
VIT_18s0089g00560.t01	Wine grape	mitochondrion, peroxisome, plastid	19.71	34.9
VIT_18s0089g00590.t01	Wine grape	plastid	27.65	23.92

Protein Annotations

KEGG:00010+1.2.1.12	KEGG:00710+1.2.1.12	EntrezGene:100264789	wikigene:100264789	MapMan:2.1.1.4.1	Gene3D:3.30.360.10
Gene3D:3.40.50.720	ProteinID:CCB51237	ProteinID:CCB51237.1	UniProt:F6HG44	EMBL:FN595754	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005975	GO:GO:0006006	GO:GO:0008150
GO:GO:0008152	GO:GO:0016491	GO:GO:0016620	GO:GO:0050661	GO:GO:0051287	GO:GO:0055114
InterPro:GlycerAld/Erythrose_P_DH	InterPro:GlycerAld_3-P_DH_AS	InterPro:GlycerAld_3-P_DH_NAD(P)-bd	InterPro:GlycerAld_3-P_DH_cat	InterPro:Glyceraldehyde-3-P_DH_1	EntrezGene:LOC100264789
wikigene:LOC100264789	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00044	PFAM:PF02800	PIRSF:PIRSF000149	PRINTS:PR00078
ScanProsite:PS00071	PANTHER:PTHR10836	PANTHER:PTHR10836:SF63	SMART:SM00846	SUPFAM:SSF51735	SUPFAM:SSF55347
TIGRFAMs:TIGR01534	UniParc:UPI0002109B2F	ArrayExpress:VIT_01s0010g02460	EnsemblPlantsGene:VIT_01s0010g02460	EnsemblPlants:VIT_01s0010g02460.t01	unigene:Vvi.7665
RefSeq:XP_002270414	RefSeq:XP_002270414.1	SEG:seg	:	:	:

Description

Glyceraldehyde-3-phosphate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:F6HG44]

Coordinates

chr1:+:19543650..19546617

Molecular Weight (calculated)

36920.1 Da

IEP (calculated)

7.215

GRAVY (calculated)

-0.124

Length

340 amino acids

Sequence
(BLAST)

001: MESSDKKIKI GINGFGRIGR LVARVALQSN DVELVAVNDP FITTDYMTYM FKYDSVHGHW KHHDVKVKDS KTLLFGEKSV TVFGVRNPEE IPWAETGADY
101: VVESTGVFTD KDKAAAHLKG GAKKVIISAP SKDAPMFVMG VNEKEYKPDI DIVSNASCTT NCLAPLAKVI NDRFGIVEGL MTTVHAITAT QKTVDGPSSK
201: DWRGGRAASF NIIPSSTGAA KAVGKVLPAL NGKLTGMSFR VPTVDVSVVD LTVRLEKSAT YDEVKAAIKE ESEGKLKGIL GYTEDDVVST DFIGDSRSSI
301: FDAKAGIALN ANFLKLVSWY DNEWGYSSRV IDLIRHMASV

Best Arabidopsis Sequence Match ( AT3G04120.1 )
(BLAST)

001: MADKKIRIGI NGFGRIGRLV ARVVLQRDDV ELVAVNDPFI TTEYMTYMFK YDSVHGQWKH NELKIKDEKT LLFGEKPVTV FGIRNPEDIP WAEAGADYVV
101: ESTGVFTDKD KAAAHLKGGA KKVVISAPSK DAPMFVVGVN EHEYKSDLDI VSNASCTTNC LAPLAKVIND RFGIVEGLMT TVHSITATQK TVDGPSMKDW
201: RGGRAASFNI IPSSTGAAKA VGKVLPALNG KLTGMSFRVP TVDVSVVDLT VRLEKAATYD EIKKAIKEES EGKLKGILGY TEDDVVSTDF VGDNRSSIFD
301: AKAGIALSDK FVKLVSWYDN EWGYSSRVVD LIVHMSKA

Arabidopsis Description

GAPC1Glyceraldehyde-3-phosphate dehydrogenase GAPC1, cytosolic [Source:UniProtKB/Swiss-Prot;Acc:P25858]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.