Factsheet for Solyc05g014470.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, extracellular

Predictor Summary:

cytosol 4
plastid 2
peroxisome 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

plastid: 20363867
extracellular: 20496099
extracellular: 22892874
plastid: 22908117
nucleus: 25464976
plastid: 26371478
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 20496099 doi

D Dahal, A Pich, HP Braun, K Wydra

Institute for Plant Diseases and Plant Protection, Faculty of Natural Sciences, Leibniz Universität Hannover, Herrenhäuser Str.2, 30419 Hannover, Germany. dahal@ipp.uni-hannover.de

msms PMID: 22892874 doi

EH Konozy, H Rogniaux, M Causse, M Faurobert

Unité de Génétique et Amélioration des Fruits et Légumes, INRA, BP 94, 84143 Montfavet, France. ehkonozy@yahoo.com

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc09g009260.2.1	cytosol, cytosol, mitochondrion
Solyc10g083570.1.1	cytosol, cytosol, mitochondrion

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G13440.1	Solyc09g009260.2.1	AT2G36460.1	23316205
AT1G13440.1	Solyc10g083570.1.1	AT2G36460.1	23316205
AT1G13440.1	Solyc09g009260.2.1	AT2G36460.1	23316205
AT1G13440.1	Solyc10g083570.1.1	AT2G36460.1	23316205
AT3G04120.1	Solyc09g009260.2.1	AT2G36460.1	23316205
AT3G04120.1	Solyc10g083570.1.1	AT2G36460.1	23316205
AT3G04120.1	Solyc09g009260.2.1	AT2G36460.1	23316205
AT3G04120.1	Solyc10g083570.1.1	AT2G36460.1	23316205

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400044944	Potato	extracellular	99.41	99.41
CDY49358	Canola	cytosol, mitochondrion	92.31	92.86
Bra040146.1-P	Field mustard	cytosol	92.01	92.01
Bra040213.1-P	Field mustard	cytosol	92.01	92.01
Bra026904.1-P	Field mustard	cytosol	91.42	91.42
AT1G13440.1	Thale cress	cytosol	90.83	90.83
Bra019722.1-P	Field mustard	cytosol	78.7	90.48
Bra016729.1-P	Field mustard	cytosol	90.53	90.27
AT3G04120.1	Thale cress	cytosol	90.24	90.24
Solyc03g111010.2.1	Tomato	plastid	89.94	90.21
CDX92059	Canola	cytosol, endoplasmic reticulum, peroxisome	92.01	89.37
Solyc06g071920.2.1	Tomato	nucleus	89.05	89.32
Os04t0486600-01	Rice	plastid	89.05	89.32
CDY42906	Canola	cytosol	92.01	88.1
CDX74199	Canola	endoplasmic reticulum	91.72	88.07
VIT_01s0010g02460.t01	Wine grape	cytosol	88.17	87.65
Os02t0601300-01	Rice	plasma membrane	86.69	86.94
TraesCS6D01G196300.2	Wheat	golgi, nucleus	85.21	85.46
Zm00001d051001_P002	Maize	cytosol	85.21	85.46
EES05377	Sorghum	cytosol	85.21	85.46
TraesCS6A01G213700.1	Wheat	unclear	84.91	85.16
TraesCS7B01G213300.1	Wheat	golgi	84.91	85.16
KXG24320	Sorghum	cytosol	84.91	85.16
TraesCS7D01G309500.1	Wheat	cytosol	84.91	85.16
KXG20851	Sorghum	cytosol	84.32	84.57
KXG21112	Sorghum	cytosol	84.32	84.57
Zm00001d049641_P001	Maize	plasma membrane, plastid	84.02	84.27
Solyc05g005820.2.1	Tomato	plastid, unclear	84.02	84.27
Os08t0126300-01	Rice	cytosol	84.02	84.27
CDX98100	Canola	cytosol, mitochondrion, peroxisome	78.7	83.65
PGSC0003DMT400044945	Potato	cytosol	43.79	83.62
OQU77090	Sorghum	cytosol	54.14	82.43
CDY50169	Canola	cytosol	90.53	82.26
CDY21098	Canola	cytosol	90.53	82.04
Zm00001d035156_P003	Maize	cytosol	83.73	81.09
CDY26651	Canola	mitochondrion, peroxisome	79.29	80.48
TraesCS6B01G243700.1	Wheat	endoplasmic reticulum	85.21	80.45
TraesCS7A01G313100.1	Wheat	cytosol	81.95	80.29
CDY21135	Canola	cytosol, mitochondrion, peroxisome, plastid	80.47	79.77
HORVU6Hr1G054520.3	Barley	cytosol, mitochondrion	85.8	79.67
TraesCS7B01G234400.1	Wheat	cytosol	80.18	79.01
Solyc05g014480.2.1	Tomato	cytosol	8.88	78.95
CDY30032	Canola	cytosol	91.12	78.37
HORVU7Hr1G074690.3	Barley	extracellular, plasma membrane	85.21	73.28
Solyc01g098950.1.1	Tomato	cytosol	60.06	73.02
CDY29987	Canola	cytosol, peroxisome, plastid	80.47	72.34
CDY16090	Canola	cytoskeleton, cytosol, peroxisome	91.12	71.63
GSMUA_Achr2P02600_001	Banana	cytosol	10.95	63.79
GSMUA_Achr2P02610_001	Banana	cytosol	14.5	63.64
Solyc10g005510.2.1	Tomato	plastid	74.26	59.9
Zm00001d017121_P001	Maize	plastid	85.21	56.47
KRH37937	Soybean	plastid	14.2	54.55
Solyc03g111000.2.1	Tomato	cytosol	27.81	54.02
Solyc04g009030.2.1	Tomato	plastid	45.86	38.85
Solyc02g020940.2.1	Tomato	plastid	46.45	38.39
Solyc12g094640.1.1	Tomato	plastid	48.82	36.67
Solyc04g082630.2.1	Tomato	plastid	49.41	35.08

Protein Annotations

KEGG:00010+1.2.1.12	KEGG:00710+1.2.1.12	MapMan:2.1.1.4.1	Gene3D:3.30.360.10	Gene3D:3.40.50.720	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005975	GO:GO:0006006	GO:GO:0008150
GO:GO:0008152	GO:GO:0016491	GO:GO:0016620	GO:GO:0050661	GO:GO:0051287	GO:GO:0055114
InterPro:GlycerAld/Erythrose_P_DH	InterPro:GlycerAld_3-P_DH_AS	InterPro:GlycerAld_3-P_DH_NAD(P)-bd	InterPro:GlycerAld_3-P_DH_cat	InterPro:Glyceraldehyde-3-P_DH_1	UniProt:K4BYG6
InterPro:NAD(P)-bd_dom_sf	PFAM:PF00044	PFAM:PF02800	PIRSF:PIRSF000149	PRINTS:PR00078	ScanProsite:PS00071
PANTHER:PTHR10836	PANTHER:PTHR10836:SF63	SMART:SM00846	SUPFAM:SSF51735	SUPFAM:SSF55347	EnsemblPlantsGene:Solyc05g014470.2
EnsemblPlants:Solyc05g014470.2.1	TIGRFAMs:TIGR01534	UniParc:UPI00027664CE	SEG:seg	:	:

Description

Glyceraldehyde-3-phosphate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:K4BYG6]

Coordinates

chr5:+:8322381..8324881

Molecular Weight (calculated)

36675.9 Da

IEP (calculated)

6.798

GRAVY (calculated)

-0.113

Length

338 amino acids

Sequence
(BLAST)

001: MANGKIKIGI NGFGRIGRLV ARVALQRDDV ELVAVNDPFI STDYMTYMFK YDSVHGQWKH HELKVKDEKT LLFGEKAVTV FGIRNPEDIP WGEAGADFVV
101: ESTGVFTDKD KAAAHLKGGA KKVVISAPSK DAPMFVVGVN ENEYKPELDI VSNASCTTNC LAPLAKVIND RFGIVEGLMT TVHAMTATQK TVDGPSMKDW
201: RGGRAASFNI IPSSTGAAKA VGKVLPQLNG KLTGMAFRVP TADVSVVDLT VRLEKEASYE DIKAAIKEES EGKLKGILGY TEDDVVSTDF VGDSRSSIFD
301: AKAGIALSKN FVKVVSWYDN EWGYSSRVID LICHMAKA

Best Arabidopsis Sequence Match ( AT1G13440.1 )
(BLAST)

001: MADKKIRIGI NGFGRIGRLV ARVVLQRDDV ELVAVNDPFI TTEYMTYMFK YDSVHGQWKH HELKVKDDKT LLFGEKPVTV FGIRNPEDIP WGEAGADFVV
101: ESTGVFTDKD KAAAHLKGGA KKVVISAPSK DAPMFVVGVN EHEYKSDLDI VSNASCTTNC LAPLAKVIND RFGIVEGLMT TVHSITATQK TVDGPSMKDW
201: RGGRAASFNI IPSSTGAAKA VGKVLPSLNG KLTGMSFRVP TVDVSVVDLT VRLEKAATYD EIKKAIKEES EGKMKGILGY TEDDVVSTDF VGDNRSSIFD
301: AKAGIALSDK FVKLVSWYDN EWGYSSRVVD LIVHMSKA

Arabidopsis Description

GAPC2Glyceraldehyde-3-phosphate dehydrogenase GAPC2, cytosolic [Source:UniProtKB/Swiss-Prot;Acc:Q9FX54]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.