Factsheet for Bra040213.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
plastid 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	cytosol
EpiLoc:	plastid
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra017233.1-P	cytosol, cytosol, mitochondrion
Bra017234.1-P	cytosol, cytosol, mitochondrion

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G13440.1	Bra017233.1-P	AT2G36460.1	23316205
AT1G13440.1	Bra017234.1-P	AT2G36460.1	23316205
AT1G13440.1	Bra017233.1-P	AT2G36460.1	23316205
AT1G13440.1	Bra017234.1-P	AT2G36460.1	23316205
AT3G04120.1	Bra017233.1-P	AT2G36460.1	23316205
AT3G04120.1	Bra017234.1-P	AT2G36460.1	23316205
AT3G04120.1	Bra017233.1-P	AT2G36460.1	23316205
AT3G04120.1	Bra017234.1-P	AT2G36460.1	23316205

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY49358	Canola	cytosol, mitochondrion	99.11	99.7
Bra040146.1-P	Field mustard	cytosol	97.63	97.63
AT1G13440.1	Thale cress	cytosol	96.75	96.75
Bra026904.1-P	Field mustard	cytosol	96.75	96.75
Bra019722.1-P	Field mustard	cytosol	84.02	96.6
Bra016729.1-P	Field mustard	cytosol	96.45	96.17
AT3G04120.1	Thale cress	cytosol	96.15	96.15
CDY42906	Canola	cytosol	99.11	94.9
PGSC0003DMT400044944	Potato	extracellular	92.01	92.01
Solyc05g014470.2.1	Tomato	extracellular, plastid	92.01	92.01
VIT_17s0000g10430.t01	Wine grape	extracellular	89.94	90.21
Os04t0486600-01	Rice	plastid	89.35	89.61
KRG97466	Soybean	endoplasmic reticulum, nucleus	89.94	89.41
KRH63724	Soybean	nucleus	89.05	89.05
KRH63725	Soybean	endoplasmic reticulum, nucleus	88.76	88.76
KRH54234	Soybean	endoplasmic reticulum, nucleus	88.46	88.46
KRH54227	Soybean	endoplasmic reticulum, nucleus	88.46	88.46
KRH31426	Soybean	endoplasmic reticulum	88.76	88.24
Os02t0601300-01	Rice	plasma membrane	87.87	88.13
EES05377	Sorghum	cytosol	87.57	87.83
TraesCS7D01G309500.1	Wheat	cytosol	87.57	87.83
TraesCS7B01G213300.1	Wheat	golgi	87.57	87.83
Zm00001d051001_P002	Maize	cytosol	87.28	87.54
TraesCS6D01G196300.2	Wheat	golgi, nucleus	86.69	86.94
TraesCS6A01G213700.1	Wheat	unclear	86.39	86.65
KXG24320	Sorghum	cytosol	86.39	86.65
KXG20851	Sorghum	cytosol	85.8	86.05
Zm00001d049641_P001	Maize	plasma membrane, plastid	85.5	85.76
Os08t0126300-01	Rice	cytosol	85.5	85.76
KXG21112	Sorghum	cytosol	85.5	85.76
CDY21135	Canola	cytosol, mitochondrion, peroxisome, plastid	86.09	85.34
Zm00001d035156_P003	Maize	cytosol	85.8	83.09
TraesCS7A01G313100.1	Wheat	cytosol	84.62	82.9
OQU77090	Sorghum	cytosol	54.44	82.88
TraesCS6B01G243700.1	Wheat	endoplasmic reticulum	86.69	81.84
HORVU6Hr1G054520.3	Barley	cytosol, mitochondrion	86.69	80.49
TraesCS7B01G234400.1	Wheat	cytosol	81.07	79.88
PGSC0003DMT400044945	Potato	cytosol	40.83	77.97
CDY29987	Canola	cytosol, peroxisome, plastid	85.8	77.13
HORVU7Hr1G074690.3	Barley	extracellular, plasma membrane	87.57	75.32
GSMUA_Achr2P02600_001	Banana	cytosol	11.24	65.52
GSMUA_Achr2P02610_001	Banana	cytosol	13.61	59.74
Bra008416.1-P	Field mustard	plastid	72.19	58.8
Zm00001d017121_P001	Maize	plastid	87.28	57.84
Bra026068.1-P	Field mustard	plastid	72.19	57.55
Bra003606.1-P	Field mustard	plastid	72.19	57.14
KRH37937	Soybean	plastid	12.72	48.86
Bra019797.1-P	Field mustard	plastid	47.63	40.35
Bra026948.1-P	Field mustard	plastid	46.75	39.6
Bra025219.1-P	Field mustard	plastid	44.38	39.47
Bra032939.1-P	Field mustard	plastid	37.28	37.72
Bra034927.1-P	Field mustard	plastid	47.93	36.16

Protein Annotations

KEGG:00010+1.2.1.12	KEGG:00710+1.2.1.12	MapMan:2.1.1.4.1	Gene3D:3.30.360.10	Gene3D:3.40.50.720	EnsemblPlantsGene:Bra040213
EnsemblPlants:Bra040213.1	EnsemblPlants:Bra040213.1-P	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005975	GO:GO:0006006	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0016620
GO:GO:0050661	GO:GO:0051287	GO:GO:0055114	InterPro:GlycerAld/Erythrose_P_DH	InterPro:GlycerAld_3-P_DH_AS	InterPro:GlycerAld_3-P_DH_NAD(P)-bd
InterPro:GlycerAld_3-P_DH_cat	InterPro:Glyceraldehyde-3-P_DH_1	UniProt:M4FGI5	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00044	PFAM:PF02800
PIRSF:PIRSF000149	PRINTS:PR00078	ScanProsite:PS00071	PANTHER:PTHR10836	PANTHER:PTHR10836:SF63	SMART:SM00846
SUPFAM:SSF51735	SUPFAM:SSF55347	TIGRFAMs:TIGR01534	UniParc:UPI000253EC04	SEG:seg	:

Description

AT1G13440 (E=2e-168) GAPC-2, GAPC2 | GAPC2 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C2); NAD or NADH binding / binding / catalytic/ glyceraldehyde-3-phosphate dehydrogenase (phosphorylating)/ glyceraldehyde-3-phosphate dehydrogenase

Coordinates

chrScaffold000191:-:134132..136424

Molecular Weight (calculated)

36770.1 Da

IEP (calculated)

7.197

GRAVY (calculated)

-0.117

Length

338 amino acids

Sequence
(BLAST)

001: MAGGKIKIGI NGFGRIGRLV ARVVLQRDDV ELVAVNDPFI TTEYMTYMFK YDSVHGQWKH HELKVKDEKT LLFGEKPVTV FGIRNPEDIP WGEAGADFVV
101: ESTGVFTDKD KAAAHLKGGA KKVVISAPSK DAPMFVVGVN EHEYKSDLDI VSNASCTTNC LAPLAKVIND RFGIVEGLMT TVHSITATQK TVDGPSMKDR
201: RGGRAASFNI IPSSTGAAKA VGKVLPQLNG KLTGMSFRVP TVDVSVVDLT VRLEKAATYD EIKKAIKEES EGKLKGILGY TEDDVVSTDF VGDSRSSIFD
301: AKAGIALSDN FVKLVSWYDN EWGYSTRVVD LIVHMSKC

Best Arabidopsis Sequence Match ( AT1G13440.1 )
(BLAST)

001: MADKKIRIGI NGFGRIGRLV ARVVLQRDDV ELVAVNDPFI TTEYMTYMFK YDSVHGQWKH HELKVKDDKT LLFGEKPVTV FGIRNPEDIP WGEAGADFVV
101: ESTGVFTDKD KAAAHLKGGA KKVVISAPSK DAPMFVVGVN EHEYKSDLDI VSNASCTTNC LAPLAKVIND RFGIVEGLMT TVHSITATQK TVDGPSMKDW
201: RGGRAASFNI IPSSTGAAKA VGKVLPSLNG KLTGMSFRVP TVDVSVVDLT VRLEKAATYD EIKKAIKEES EGKMKGILGY TEDDVVSTDF VGDNRSSIFD
301: AKAGIALSDK FVKLVSWYDN EWGYSSRVVD LIVHMSKA

Arabidopsis Description

GAPC2Glyceraldehyde-3-phosphate dehydrogenase GAPC2, cytosolic [Source:UniProtKB/Swiss-Prot;Acc:Q9FX54]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.