CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES04064	cytosol, cytosol, mitochondrion
EES06798	cytosol, cytosol, mitochondrion

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G13440.1	EES04064	AT2G36460.1	23316205
AT1G13440.1	EES06798	AT2G36460.1	23316205
AT1G13440.1	EES04064	AT2G36460.1	23316205
AT1G13440.1	EES06798	AT2G36460.1	23316205
AT3G04120.1	EES04064	AT2G36460.1	23316205
AT3G04120.1	EES06798	AT2G36460.1	23316205
AT3G04120.1	EES04064	AT2G36460.1	23316205
AT3G04120.1	EES06798	AT2G36460.1	23316205

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG24320	Sorghum	cytosol	99.41	99.41
TraesCS7B01G213300.1	Wheat	golgi	94.66	94.66
TraesCS7D01G309500.1	Wheat	cytosol	94.66	94.66
OQU77090	Sorghum	cytosol	62.31	94.59
Os08t0126300-01	Rice	cytosol	93.18	93.18
OQU77089	Sorghum	cytosol	36.2	89.71
TraesCS7A01G313100.1	Wheat	cytosol	90.8	88.7
EES05377	Sorghum	cytosol	87.24	87.24
Bra016729.1-P	Field mustard	cytosol	86.94	86.43
Bra026904.1-P	Field mustard	cytosol	86.65	86.39
CDY49358	Canola	cytosol, mitochondrion	86.05	86.31
Bra040213.1-P	Field mustard	cytosol	86.05	85.8
KRG97466	Soybean	endoplasmic reticulum, nucleus	86.35	85.59
KXG21112	Sorghum	cytosol	85.46	85.46
VIT_01s0010g02460.t01	Wine grape	cytosol	86.05	85.29
KRH31426	Soybean	endoplasmic reticulum	86.05	85.29
AT3G04120.1	Thale cress	cytosol	85.46	85.21
Bra040146.1-P	Field mustard	cytosol	85.46	85.21
Solyc06g071920.2.1	Tomato	nucleus	85.16	85.16
AT1G13440.1	Thale cress	cytosol	85.16	84.91
PGSC0003DMT400044944	Potato	extracellular	84.87	84.62
PGSC0003DMT400069357	Potato	cytosol	84.57	84.57
Bra019722.1-P	Field mustard	cytosol	73.59	84.35
Solyc05g014470.2.1	Tomato	extracellular, plastid	84.57	84.32
KRH63724	Soybean	nucleus	84.57	84.32
KRH63725	Soybean	endoplasmic reticulum, nucleus	84.27	84.02
KRH54227	Soybean	endoplasmic reticulum, nucleus	83.98	83.73
KRH54234	Soybean	endoplasmic reticulum, nucleus	83.98	83.73
VIT_17s0000g10430.t01	Wine grape	extracellular	83.38	83.38
PGSC0003DMT400039449	Potato	extracellular	83.09	83.09
Solyc03g111010.2.1	Tomato	plastid	83.09	83.09
CDX92059	Canola	cytosol, endoplasmic reticulum, peroxisome	85.76	83.05
CDY42906	Canola	cytosol	85.76	81.87
CDX74199	Canola	endoplasmic reticulum	85.46	81.82
HORVU7Hr1G074690.3	Barley	extracellular, plasma membrane	94.66	81.17
CDY50169	Canola	cytosol	86.65	78.49
CDY21098	Canola	cytosol	86.65	78.28
CDX98100	Canola	cytosol, mitochondrion, peroxisome	73.59	77.99
CDY26651	Canola	mitochondrion, peroxisome	74.18	75.08
CDY30032	Canola	cytosol	86.35	74.05
CDY21135	Canola	cytosol, mitochondrion, peroxisome, plastid	73.59	72.73
PGSC0003DMT400044945	Potato	cytosol	35.91	68.36
CDY16090	Canola	cytoskeleton, cytosol, peroxisome	86.94	68.14
CDY29987	Canola	cytosol, peroxisome, plastid	73.59	65.96
EES04595	Sorghum	plastid	73.89	60.29
KRH37937	Soybean	plastid	13.06	50.0
KXG19697	Sorghum	cytosol	11.57	40.21
KXG26468	Sorghum	plastid	47.18	38.04
KXG40264	Sorghum	plastid	47.18	35.81
KXG28726	Sorghum	cytosol	16.02	35.53

Protein Annotations

KEGG:00010+1.2.1.12	KEGG:00710+1.2.1.12	MapMan:2.1.1.4.1	Gene3D:3.30.360.10	Gene3D:3.40.50.720	UniProt:A0A194YMM6
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005975	GO:GO:0006006
GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0016620	GO:GO:0050661	GO:GO:0051287
GO:GO:0055114	InterPro:GlycerAld/Erythrose_P_DH	InterPro:GlycerAld_3-P_DH_AS	InterPro:GlycerAld_3-P_DH_NAD(P)-bd	InterPro:GlycerAld_3-P_DH_cat	InterPro:Glyceraldehyde-3-P_DH_1
EnsemblPlants:KXG20851	ProteinID:KXG20851	ProteinID:KXG20851.1	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00044	PFAM:PF02800
PIRSF:PIRSF000149	PRINTS:PR00078	ScanProsite:PS00071	PANTHER:PTHR10836	PANTHER:PTHR10836:SF58	MetaCyc:PWY-1042
MetaCyc:PWY-5484	MetaCyc:PWY-6901	MetaCyc:PWY-7003	SMART:SM00846	EnsemblPlantsGene:SORBI_3010G262500	SUPFAM:SSF51735
SUPFAM:SSF55347	TIGRFAMs:TIGR01534	UniParc:UPI0001C804C9	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr10:-:59901656..59905772

Molecular Weight (calculated)

36528.7 Da

IEP (calculated)

7.214

GRAVY (calculated)

-0.080

Length

337 amino acids

Sequence
(BLAST)

001: MGKIKIGING FGRIGRLVAR VALQSEDVEL VAVNDPFITT DYMTYMFKYD TVHGHWKHSD ITLKDSKTLL FGQKPVTVFG IRNPEEIPWG EAGADYVVES
101: TGVFTDKDKA AAHLKGGAKK VVISAPSKDA PMFVVGVNED KYTSDINIVS NASCTTNCLA PLAKVIHDNF GIIEGLMTTV HAITATQKTV DGPSAKDWRG
201: GRAASFNIIP SSTGAAKAVG KVLPDLNGKL TGMSFRVPTV DVSVVDLTVR IEKGASYEDI KKAIKAASEG PLKGIMGYVE EDLVSTDFVG DSRSSIFDAK
301: AGIALNDNFI KLVSWYDNEW GYSNRVVDLI RHMFKTQ

Best Arabidopsis Sequence Match ( AT3G04120.1 )
(BLAST)

001: MADKKIRIGI NGFGRIGRLV ARVVLQRDDV ELVAVNDPFI TTEYMTYMFK YDSVHGQWKH NELKIKDEKT LLFGEKPVTV FGIRNPEDIP WAEAGADYVV
101: ESTGVFTDKD KAAAHLKGGA KKVVISAPSK DAPMFVVGVN EHEYKSDLDI VSNASCTTNC LAPLAKVIND RFGIVEGLMT TVHSITATQK TVDGPSMKDW
201: RGGRAASFNI IPSSTGAAKA VGKVLPALNG KLTGMSFRVP TVDVSVVDLT VRLEKAATYD EIKKAIKEES EGKLKGILGY TEDDVVSTDF VGDNRSSIFD
301: AKAGIALSDK FVKLVSWYDN EWGYSSRVVD LIVHMSKA

Arabidopsis Description

GAPC1Glyceraldehyde-3-phosphate dehydrogenase GAPC1, cytosolic [Source:UniProtKB/Swiss-Prot;Acc:P25858]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.