Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS3A01G391100.1 | cytosol, cytosol, mitochondrion |
| TraesCS3A01G391500.1 | cytosol, cytosol, mitochondrion |
| TraesCS3B01G422900.1 | cytosol, cytosol, mitochondrion |
| TraesCS3B01G423200.1 | cytosol, cytosol, mitochondrion |
| TraesCS3D01G383700.1 | cytosol, cytosol, mitochondrion |
| TraesCS3D01G384000.1 | cytosol, cytosol, mitochondrion |
| TraesCS3D01G384100.2 | cytosol, cytosol, mitochondrion |
| TraesCS5A01G009400.1 | cytosol, cytosol, mitochondrion |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G309500.1 | Wheat | cytosol | 93.62 | 95.85 |
| TraesCS7B01G213300.1 | Wheat | golgi | 93.62 | 95.85 |
| KXG24320 | Sorghum | cytosol | 88.7 | 90.8 |
| KXG20851 | Sorghum | cytosol | 88.7 | 90.8 |
| Zm00001d049641_P001 | Maize | plasma membrane, plastid | 88.41 | 90.5 |
| OQU77090 | Sorghum | cytosol | 57.97 | 90.09 |
| Os08t0126300-01 | Rice | cytosol | 86.67 | 88.72 |
| Zm00001d035156_P003 | Maize | cytosol | 88.7 | 87.68 |
| CDY49358 | Canola | cytosol, mitochondrion | 82.9 | 85.12 |
| Bra016729.1-P | Field mustard | cytosol | 83.48 | 84.96 |
| Bra026904.1-P | Field mustard | cytosol | 83.19 | 84.91 |
| Bra040213.1-P | Field mustard | cytosol | 82.9 | 84.62 |
| AT3G04120.1 | Thale cress | cytosol | 82.61 | 84.32 |
| AT1G13440.1 | Thale cress | cytosol | 82.61 | 84.32 |
| Bra040146.1-P | Field mustard | cytosol | 82.03 | 83.73 |
| VIT_01s0010g02460.t01 | Wine grape | cytosol | 82.32 | 83.53 |
| KRH31426 | Soybean | endoplasmic reticulum | 82.03 | 83.24 |
| KRG97466 | Soybean | endoplasmic reticulum, nucleus | 82.03 | 83.24 |
| KRH63724 | Soybean | nucleus | 81.16 | 82.84 |
| TraesCS6A01G213700.1 | Wheat | unclear | 80.87 | 82.79 |
| Solyc06g071920.2.1 | Tomato | nucleus | 80.87 | 82.79 |
| Bra019722.1-P | Field mustard | cytosol | 70.43 | 82.65 |
| KRH63725 | Soybean | endoplasmic reticulum, nucleus | 80.87 | 82.54 |
| PGSC0003DMT400069357 | Potato | cytosol | 80.58 | 82.49 |
| KRH54227 | Soybean | endoplasmic reticulum, nucleus | 80.58 | 82.25 |
| KRH54234 | Soybean | endoplasmic reticulum, nucleus | 80.58 | 82.25 |
| PGSC0003DMT400044944 | Potato | extracellular | 80.58 | 82.25 |
| Solyc05g014470.2.1 | Tomato | extracellular, plastid | 80.29 | 81.95 |
| CDX92059 | Canola | cytosol, endoplasmic reticulum, peroxisome | 82.61 | 81.9 |
| HORVU7Hr1G074690.3 | Barley | extracellular, plasma membrane | 93.04 | 81.68 |
| VIT_17s0000g10430.t01 | Wine grape | extracellular | 79.42 | 81.31 |
| PGSC0003DMT400039449 | Potato | extracellular | 79.13 | 81.01 |
| CDY42906 | Canola | cytosol | 82.61 | 80.74 |
| Solyc03g111010.2.1 | Tomato | plastid | 78.84 | 80.71 |
| CDX74199 | Canola | endoplasmic reticulum | 82.32 | 80.68 |
| CDY50169 | Canola | cytosol | 83.19 | 77.15 |
| CDY21098 | Canola | cytosol | 83.19 | 76.94 |
| CDX98100 | Canola | cytosol, mitochondrion, peroxisome | 70.43 | 76.42 |
| CDY26651 | Canola | mitochondrion, peroxisome | 71.01 | 73.57 |
| CDY30032 | Canola | cytosol | 82.9 | 72.77 |
| CDY21135 | Canola | cytosol, mitochondrion, peroxisome, plastid | 70.72 | 71.55 |
| CDY16090 | Canola | cytoskeleton, cytosol, peroxisome | 83.48 | 66.98 |
| PGSC0003DMT400044945 | Potato | cytosol | 34.2 | 66.67 |
| CDY29987 | Canola | cytosol, peroxisome, plastid | 70.72 | 64.89 |
| TraesCS6A01G157500.1 | Wheat | plastid | 68.7 | 56.97 |
| TraesCS7A01G478100.2 | Wheat | plastid | 66.67 | 56.1 |
| KRH37937 | Soybean | plastid | 10.43 | 40.91 |
| TraesCS2A01G344600.1 | Wheat | golgi, plastid | 44.93 | 38.65 |
| TraesCS5A01G495100.1 | Wheat | golgi, plastid | 46.09 | 35.81 |
Protein Annotations
| KEGG:00010+1.2.1.12 | KEGG:00710+1.2.1.12 | MapMan:2.1.1.4.1 | Gene3D:3.30.360.10 | Gene3D:3.40.50.720 | GO:GO:0000166 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005975 | GO:GO:0006006 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0016620 | GO:GO:0050661 | GO:GO:0051287 | GO:GO:0055114 | InterPro:GlycerAld/Erythrose_P_DH |
| InterPro:GlycerAld_3-P_DH_AS | InterPro:GlycerAld_3-P_DH_NAD(P)-bd | InterPro:GlycerAld_3-P_DH_cat | InterPro:Glyceraldehyde-3-P_DH_1 | InterPro:NAD(P)-bd_dom_sf | PFAM:PF00044 |
| PFAM:PF02800 | PIRSF:PIRSF000149 | PRINTS:PR00078 | ScanProsite:PS00071 | PANTHER:PTHR10836 | PANTHER:PTHR10836:SF58 |
| SMART:SM00846 | SUPFAM:SSF51735 | SUPFAM:SSF55347 | TIGRFAMs:TIGR01534 | EnsemblPlantsGene:TraesCS7A01G313100 | EnsemblPlants:TraesCS7A01G313100.1 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr7A:-:444982881..444986082
Molecular Weight (calculated)
37370.7 Da
IEP (calculated)
7.773
GRAVY (calculated)
-0.132
Length
345 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKIKIGING FGRIGRLVAR VALQSDDVEL VAVNDPFITT EYMTYMFKYD TVHGHWKHSD IKLKDDKTLL FGEKPVTVFG VRNPEEIPWG EAGADYVVES
101: TGVFTDKDKA AAHLKGGAKK VVISAPSKDA PMFVVGVNED KYTSDVNIVS NASCTTNCLA PLAKIINDNF GIIEGLMTTV HAITATQKTV DGPSSKDWRG
201: GRAASFNIIP SSTGAAKAVG KVLPELNGKL TGMSFRVPTV DVSVVDLTVR TEKAASYDDI KKAIKAASEG KLKGIMGYVE EDLVSTDFVG DSRSSIFDAK
301: AGIALNDHFV KLVSWYDNEW GYRCPCFVYA KNKCGWCRQT TPGSC
101: TGVFTDKDKA AAHLKGGAKK VVISAPSKDA PMFVVGVNED KYTSDVNIVS NASCTTNCLA PLAKIINDNF GIIEGLMTTV HAITATQKTV DGPSSKDWRG
201: GRAASFNIIP SSTGAAKAVG KVLPELNGKL TGMSFRVPTV DVSVVDLTVR TEKAASYDDI KKAIKAASEG KLKGIMGYVE EDLVSTDFVG DSRSSIFDAK
301: AGIALNDHFV KLVSWYDNEW GYRCPCFVYA KNKCGWCRQT TPGSC
001: MADKKIRIGI NGFGRIGRLV ARVVLQRDDV ELVAVNDPFI TTEYMTYMFK YDSVHGQWKH HELKVKDDKT LLFGEKPVTV FGIRNPEDIP WGEAGADFVV
101: ESTGVFTDKD KAAAHLKGGA KKVVISAPSK DAPMFVVGVN EHEYKSDLDI VSNASCTTNC LAPLAKVIND RFGIVEGLMT TVHSITATQK TVDGPSMKDW
201: RGGRAASFNI IPSSTGAAKA VGKVLPSLNG KLTGMSFRVP TVDVSVVDLT VRLEKAATYD EIKKAIKEES EGKMKGILGY TEDDVVSTDF VGDNRSSIFD
301: AKAGIALSDK FVKLVSWYDN EWGYSSRVVD LIVHMSKA
101: ESTGVFTDKD KAAAHLKGGA KKVVISAPSK DAPMFVVGVN EHEYKSDLDI VSNASCTTNC LAPLAKVIND RFGIVEGLMT TVHSITATQK TVDGPSMKDW
201: RGGRAASFNI IPSSTGAAKA VGKVLPSLNG KLTGMSFRVP TVDVSVVDLT VRLEKAATYD EIKKAIKEES EGKMKGILGY TEDDVVSTDF VGDNRSSIFD
301: AKAGIALSDK FVKLVSWYDN EWGYSSRVVD LIVHMSKA
Arabidopsis Description
GAPC2Glyceraldehyde-3-phosphate dehydrogenase GAPC2, cytosolic [Source:UniProtKB/Swiss-Prot;Acc:Q9FX54]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.