CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EES04064	cytosol, cytosol, mitochondrion
EES06798	cytosol, cytosol, mitochondrion

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G13440.1	EES04064	AT2G36460.1	23316205
AT1G13440.1	EES06798	AT2G36460.1	23316205
AT1G13440.1	EES04064	AT2G36460.1	23316205
AT1G13440.1	EES06798	AT2G36460.1	23316205
AT3G04120.1	EES04064	AT2G36460.1	23316205
AT3G04120.1	EES06798	AT2G36460.1	23316205
AT3G04120.1	EES04064	AT2G36460.1	23316205
AT3G04120.1	EES06798	AT2G36460.1	23316205

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG20851	Sorghum	cytosol	94.59	62.31
KXG24320	Sorghum	cytosol	93.69	61.72
TraesCS7D01G309500.1	Wheat	cytosol	90.09	59.35
TraesCS7B01G213300.1	Wheat	golgi	90.09	59.35
Os08t0126300-01	Rice	cytosol	89.19	58.75
TraesCS7A01G313100.1	Wheat	cytosol	90.09	57.97
Bra019722.1-P	Field mustard	cytosol	75.68	57.14
EES05377	Sorghum	cytosol	85.14	56.08
KRG97466	Soybean	endoplasmic reticulum, nucleus	85.59	55.88
KRH31426	Soybean	endoplasmic reticulum	85.59	55.88
Bra016729.1-P	Field mustard	cytosol	84.68	55.46
VIT_01s0010g02460.t01	Wine grape	cytosol	84.68	55.29
CDY49358	Canola	cytosol, mitochondrion	83.33	55.06
AT3G04120.1	Thale cress	cytosol	83.78	55.03
AT1G13440.1	Thale cress	cytosol	83.78	55.03
KXG21112	Sorghum	cytosol	83.33	54.9
Solyc06g071920.2.1	Tomato	nucleus	83.33	54.9
VIT_17s0000g10430.t01	Wine grape	extracellular	83.33	54.9
Bra040146.1-P	Field mustard	cytosol	83.33	54.73
Bra026904.1-P	Field mustard	cytosol	83.33	54.73
PGSC0003DMT400069357	Potato	cytosol	82.88	54.6
Bra040213.1-P	Field mustard	cytosol	82.88	54.44
KRH63724	Soybean	nucleus	82.88	54.44
Solyc05g014470.2.1	Tomato	extracellular, plastid	82.43	54.14
PGSC0003DMT400044944	Potato	extracellular	82.43	54.14
KRH63725	Soybean	endoplasmic reticulum, nucleus	82.43	54.14
KRH54234	Soybean	endoplasmic reticulum, nucleus	82.43	54.14
KRH54227	Soybean	endoplasmic reticulum, nucleus	82.43	54.14
Solyc03g111010.2.1	Tomato	plastid	81.08	53.41
PGSC0003DMT400039449	Potato	extracellular	81.08	53.41
CDX92059	Canola	cytosol, endoplasmic reticulum, peroxisome	83.33	53.16
CDX98100	Canola	cytosol, mitochondrion, peroxisome	75.68	52.83
CDX74199	Canola	endoplasmic reticulum	82.88	52.27
CDY42906	Canola	cytosol	82.88	52.12
HORVU7Hr1G074690.3	Barley	extracellular, plasma membrane	90.54	51.15
CDY26651	Canola	mitochondrion, peroxisome	75.68	50.45
CDY50169	Canola	cytosol	84.23	50.27
CDY21098	Canola	cytosol	84.23	50.13
CDY21135	Canola	cytosol, mitochondrion, peroxisome, plastid	75.23	48.97
CDY30032	Canola	cytosol	83.78	47.33
CDY29987	Canola	cytosol, peroxisome, plastid	75.23	44.41
CDY16090	Canola	cytoskeleton, cytosol, peroxisome	84.23	43.49
KXG19697	Sorghum	cytosol	16.67	38.14
EES04595	Sorghum	plastid	67.57	36.32
KXG28726	Sorghum	cytosol	22.52	32.89
PGSC0003DMT400044945	Potato	cytosol	25.23	31.64
KXG26468	Sorghum	plastid	45.5	24.16
KXG40264	Sorghum	plastid	45.5	22.75
OQU77089	Sorghum	cytosol	1.8	2.94
KRH37937	Soybean	plastid	0.45	1.14

Protein Annotations

Gene3D:3.40.50.720	MapMan:50.1.2	UniProt:A0A1W0VUZ2	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	GO:GO:0016620	GO:GO:0055114	InterPro:GlycerAld/Erythrose_P_DH	InterPro:GlycerAld_3-P_DH_AS	InterPro:GlycerAld_3-P_DH_NAD(P)-bd
InterPro:GlycerAld_3-P_DH_cat	InterPro:NAD(P)-bd_dom_sf	EnsemblPlants:OQU77090	ProteinID:OQU77090	ProteinID:OQU77090.1	PFAM:PF00044
PFAM:PF02800	PRINTS:PR00078	ScanProsite:PS00071	PANTHER:PTHR10836	PANTHER:PTHR10836:SF58	SMART:SM00846
EnsemblPlantsGene:SORBI_3010G262466	SUPFAM:SSF51735	SUPFAM:SSF55347	UniParc:UPI0009DC8BC5	SEG:seg	:

Description

hypothetical protein

Coordinates

chr10:-:59895315..59897394

Molecular Weight (calculated)

24109.7 Da

IEP (calculated)

7.127

GRAVY (calculated)

-0.132

Length

222 amino acids

Sequence
(BLAST)

001: MGFGRIGRLV ARVALQSEDV ELVAVNDPFI TTDYMTYMFK YDTVHGHWKH SDITLKDSKT LLFGQKPVTV FGIRNPEEIP WGEAGADYVV ESTGVFTDKD
101: KAAAHLKGGA KKVVISAPSK DAPMFVVGVN EDKYTSDINI VSNASCTTNC LAPLAKVIHD NFGIIEGLMT TVHAITATQK TVDGPSAKDW RGGRAASFNI
201: IPSSTGAAKV YNKFSNSQCW ME

Best Arabidopsis Sequence Match ( AT1G13440.1 )
(BLAST)

001: MADKKIRIGI NGFGRIGRLV ARVVLQRDDV ELVAVNDPFI TTEYMTYMFK YDSVHGQWKH HELKVKDDKT LLFGEKPVTV FGIRNPEDIP WGEAGADFVV
101: ESTGVFTDKD KAAAHLKGGA KKVVISAPSK DAPMFVVGVN EHEYKSDLDI VSNASCTTNC LAPLAKVIND RFGIVEGLMT TVHSITATQK TVDGPSMKDW
201: RGGRAASFNI IPSSTGAAKA VGKVLPSLNG KLTGMSFRVP TVDVSVVDLT VRLEKAATYD EIKKAIKEES EGKMKGILGY TEDDVVSTDF VGDNRSSIFD
301: AKAGIALSDK FVKLVSWYDN EWGYSSRVVD LIVHMSKA

Arabidopsis Description

GAPC2Glyceraldehyde-3-phosphate dehydrogenase GAPC2, cytosolic [Source:UniProtKB/Swiss-Prot;Acc:Q9FX54]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.