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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 11
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:plastid
BaCelLo:plastid
ChloroP:plastid
EpiLoc:plastid
iPSORT:plastid
MultiLoc:plastid
Plant-mPloc:plastid
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:plastid
PPI

Inferred distinct locusB in Crop

locusBlocations
EES01073
EES02247
KXG40264
OQU78515

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G42970.1 KXG40264 AT1G42970.1 21798944
AT1G42970.1 EES01073 AT2G42580.1 19000166
AT1G42970.1 EES02247 AT2G42580.1 19000166
AT1G42970.1 OQU78515 AT2G42580.1 19000166
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d027488_P001 Maize extracellular, plastid 96.4 95.32
Os03t0129300-01 Rice extracellular, plastid 93.24 93.24
TraesCS4D01G319400.1 Wheat plastid 90.77 90.77
TraesCS4B01G323000.1 Wheat plastid 90.77 90.77
HORVU4Hr1G082700.4 Barley plastid 90.77 90.77
TraesCS5A01G495100.1 Wheat golgi, plastid 90.54 90.54
GSMUA_Achr11P... Banana mitochondrion 76.35 86.26
CDY69523 Canola cytosol 77.48 85.57
VIT_18s0122g00960.t01 Wine grape plastid 84.68 83.0
Bra034927.1-P Field mustard plastid 82.66 81.92
CDY35800 Canola plastid 82.66 81.92
Solyc12g094640.1.1 Tomato plastid 82.88 81.78
PGSC0003DMT400075608 Potato cytosol, extracellular, plastid 82.66 81.56
PGSC0003DMT400025881 Potato plastid 82.66 81.56
KRH51576 Soybean nucleus, plastid 82.66 81.02
GSMUA_Achr11P... Banana plastid 82.43 80.97
KRH60895 Soybean nucleus, plastid 82.21 80.93
AT1G42970.1 Thale cress plastid 81.31 80.76
Solyc04g082630.2.1 Tomato plastid 82.88 77.31
KRH74912 Soybean cytosol 22.07 70.0
KXG26468 Sorghum plastid 65.32 69.38
KXG21112 Sorghum cytosol 36.26 47.77
EES05377 Sorghum cytosol 36.26 47.77
KXG20851 Sorghum cytosol 35.81 47.18
KXG24320 Sorghum cytosol 35.59 46.88
OQU77090 Sorghum cytosol 22.75 45.5
EES04595 Sorghum plastid 40.54 43.58
OQU77089 Sorghum cytosol 12.61 41.18
KXG28726 Sorghum cytosol 9.46 27.63
KXG19697 Sorghum cytosol 5.63 25.77
Protein Annotations
KEGG:00010+1.2.1.12KEGG:00710+1.2.1.12MapMan:1.2.3Gene3D:3.30.360.10Gene3D:3.40.50.720UniProt:A0A1B6QQR5
InterPro:DUF_CP12GO:GO:0000166GO:GO:0003674GO:GO:0003824GO:GO:0005488GO:GO:0005575
GO:GO:0005576GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005975GO:GO:0006006
GO:GO:0006950GO:GO:0008150GO:GO:0008152GO:GO:0009409GO:GO:0009416GO:GO:0009507
GO:GO:0009535GO:GO:0009536GO:GO:0009570GO:GO:0009579GO:GO:0009628GO:GO:0009744
GO:GO:0009941GO:GO:0010319GO:GO:0016020GO:GO:0016491GO:GO:0016620GO:GO:0046686
GO:GO:0048046GO:GO:0050661GO:GO:0051287GO:GO:0055114InterPro:GlycerAld/Erythrose_P_DHInterPro:GlycerAld_3-P_DH_AS
InterPro:GlycerAld_3-P_DH_NAD(P)-bdInterPro:GlycerAld_3-P_DH_catInterPro:Glyceraldehyde-3-P_DH_1EnsemblPlants:KXG40264ProteinID:KXG40264ProteinID:KXG40264.1
InterPro:NAD(P)-bd_dom_sfPFAM:PF00044PFAM:PF02672PFAM:PF02800PRINTS:PR00078ScanProsite:PS00071
PANTHER:PTHR43148PANTHER:PTHR43148:SF1MetaCyc:PWY-1042MetaCyc:PWY-5484MetaCyc:PWY-6901MetaCyc:PWY-7003
SMART:SM00846EnsemblPlantsGene:SORBI_3001G519800SUPFAM:SSF51735SUPFAM:SSF55347TIGRFAMs:TIGR01534UniParc:UPI0001C80B51
SEG:seg:::::
Description
hypothetical protein
Coordinates
chr1:-:78562255..78566153
Molecular Weight (calculated)
46794.7 Da
IEP (calculated)
6.246
GRAVY (calculated)
0.043
Length
444 amino acids
Sequence
(BLAST)
001: MATHAALAAS RIPTSARLHS RAASRQRVDF ADFSGLRPGS CSVSTAAREV SFSDVLGAQL VAKATGENAV RAPAEAKLKV AINGFGRIGR NFLRCWHGRE
101: DSPLDVVVVN DSGGVRNASH LLKYDSMLGT FKADVKIVDD TTISVDGKPI TIVSSRDPLK LPWAELGIDI VIEGTGVFVD GPGAGKHIQA GAKKVIITAP
201: AKGADIPTYV VGVNEGDYDH SVADIISNAS CTTNCLAPFV KVLDEEFGIV KGTMTTTHSY TGDQRLLDAS HRDLRRARAA ALNIVPTSTG AAKAVALVLP
301: QLKGKLNGIA LRVPTPNVSV VDLVINTVKT GITADDVNAA FRKAADGPLN GVLSVCDVPL VSVDFRCSDV SSTIDASLTM VMGDDMVKVV AWYDNEWGYS
401: QRVVDLAHLV AAKWPGAAAA GSGDPLEDFC KDNPETDECK VYEA
Best Arabidopsis Sequence Match ( AT1G42970.1 )
(BLAST)
001: MATHAALAVS RIPVTQRLQS KSAIHSFPAQ CSSKRLEVAE FSGLRMSSIG GEASFFDAVA AQIIPKAVTT STPVRGETVA KLKVAINGFG RIGRNFLRCW
101: HGRKDSPLEV VVLNDSGGVK NASHLLKYDS MLGTFKAEVK IVDNETISVD GKLIKVVSNR DPLKLPWAEL GIDIVIEGTG VFVDGPGAGK HIQAGASKVI
201: ITAPAKGADI PTYVMGVNEQ DYGHDVANII SNASCTTNCL APFAKVLDEE FGIVKGTMTT THSYTGDQRL LDASHRDLRR ARAAALNIVP TSTGAAKAVS
301: LVLPQLKGKL NGIALRVPTP NVSVVDLVIN VEKKGLTAED VNEAFRKAAN GPMKGILDVC DAPLVSVDFR CSDVSTTIDS SLTMVMGDDM VKVVAWYDNE
401: WGYSQRVVDL AHLVASKWPG AEAVGSGDPL EDFCKTNPAD EECKVYD
Arabidopsis Description
GAPBGlyceraldehyde-3-phosphate dehydrogenase GAPB, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P25857]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.