CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG20851	Sorghum	cytosol	89.71	36.2
KXG24320	Sorghum	cytosol	89.71	36.2
EES05377	Sorghum	cytosol	75.0	30.27
KXG21112	Sorghum	cytosol	73.53	29.67
VIT_18s0089g00560.t01	Wine grape	mitochondrion, peroxisome, plastid	36.76	26.04
EES04595	Sorghum	plastid	72.06	23.73
VIT_18s0089g00590.t01	Wine grape	plastid	38.97	13.49
KXG26468	Sorghum	plastid	41.18	13.4
KXG40264	Sorghum	plastid	41.18	12.61
KXG19697	Sorghum	cytosol	2.21	3.09
KXG28726	Sorghum	cytosol	2.94	2.63
OQU77090	Sorghum	cytosol	2.94	1.8

Protein Annotations

EnsemblPlants:OQU77089	EnsemblPlantsGene:SORBI_3010G262433	Gene3D:3.30.360.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	GO:GO:0016620	GO:GO:0055114	InterPro:GlycerAld/Erythrose_P_DH	InterPro:GlycerAld_3-P_DH_cat	PANTHER:PTHR10836
PANTHER:PTHR10836:SF58	PFAM:PF02800	PRINTS:PR00078	ProteinID:OQU77089	ProteinID:OQU77089.1	SUPFAM:SSF55347
UniParc:UPI0009DC92C8	UniProt:A0A1W0VUY8	MapMan:50.1.2	:	:	:

Description

hypothetical protein

Coordinates

chr10:-:59893889..59895004

Molecular Weight (calculated)

15191.3 Da

IEP (calculated)

4.707

GRAVY (calculated)

0.026

Length

136 amino acids

Sequence
(BLAST)

001: MIIDGMLYID FWYELQAVGK VLPDLNGKLT GMSFRVPTVD VSVVDLTVRI EKGASYGDIK KAIKAASEGP LKGIMGYVEE DLVSTDFVGD SRSSIFDAKA
101: GIALNDNFIK LVSWYDNEWG YSNRVVDLIR HMFKTQ

Best Arabidopsis Sequence Match ( AT1G13440.1 )
(BLAST)

001: MADKKIRIGI NGFGRIGRLV ARVVLQRDDV ELVAVNDPFI TTEYMTYMFK YDSVHGQWKH HELKVKDDKT LLFGEKPVTV FGIRNPEDIP WGEAGADFVV
101: ESTGVFTDKD KAAAHLKGGA KKVVISAPSK DAPMFVVGVN EHEYKSDLDI VSNASCTTNC LAPLAKVIND RFGIVEGLMT TVHSITATQK TVDGPSMKDW
201: RGGRAASFNI IPSSTGAAKA VGKVLPSLNG KLTGMSFRVP TVDVSVVDLT VRLEKAATYD EIKKAIKEES EGKMKGILGY TEDDVVSTDF VGDNRSSIFD
301: AKAGIALSDK FVKLVSWYDN EWGYSSRVVD LIVHMSKA

Arabidopsis Description

GAPC2Glyceraldehyde-3-phosphate dehydrogenase GAPC2, cytosolic [Source:UniProtKB/Swiss-Prot;Acc:Q9FX54]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.