CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER88061
EER94980
EES12777

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G26650.1	EES12777	AT1G32060.1	17947231
AT3G26650.1	EER88061	AT3G62410.1	17947231
AT3G26650.1	EER94980	AT3G62410.1	17947231

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d003429_P001	Maize	plastid	94.26	97.77
Os04t0459500-02	Rice	plastid	90.67	94.28
TraesCS2D01G322900.1	Wheat	plastid	88.04	91.77
TraesCS2B01G342200.1	Wheat	plastid	88.04	91.77
TraesCS2A01G344600.1	Wheat	golgi, plastid	88.04	91.77
HORVU0Hr1G004830.6	Barley	plastid	87.8	89.95
Zm00001d025607_P001	Maize	cytosol, plastid	78.71	88.44
Zm00001d025599_P001	Maize	plastid	84.21	87.34
Zm00001d025593_P001	Maize	plastid	83.49	86.6
Bra026948.1-P	Field mustard	plastid	81.82	85.71
CDY16038	Canola	plastid	81.34	85.21
CDY26599	Canola	plastid	81.34	85.21
CDX98028	Canola	plastid	81.1	84.96
CDY19412	Canola	plastid	81.1	84.96
Bra019797.1-P	Field mustard	plastid	80.86	84.71
AT3G26650.1	Thale cress	plastid	80.14	84.6
CDY28536	Canola	plastid	76.79	84.47
KRG94751	Soybean	extracellular, nucleus	81.34	84.37
Bra025219.1-P	Field mustard	plastid	76.56	84.21
CDX83635	Canola	plastid	76.56	84.21
CDY13649	Canola	plastid	76.56	84.21
KRH06774	Soybean	nucleus	81.1	84.12
GSMUA_Achr10P...	Banana	plastid	62.68	83.44
PGSC0003DMT400030050	Potato	cytosol	79.43	83.21
Solyc04g009030.2.1	Tomato	plastid	79.19	82.96
Bra032939.1-P	Field mustard	plastid	66.03	82.63
VIT_14s0068g00680.t01	Wine grape	plastid	79.67	82.43
CDY48981	Canola	plastid	72.25	82.07
Solyc02g020940.2.1	Tomato	plastid	77.75	79.46
GSMUA_Achr6P16250_001	Banana	plastid	79.67	76.03
AT1G12900.5	Thale cress	endoplasmic reticulum	80.14	75.96
KRH70104	Soybean	plastid	47.85	72.46
KXG40264	Sorghum	plastid	69.38	65.32
EES05377	Sorghum	cytosol	39.0	48.37
KXG21112	Sorghum	cytosol	38.04	47.18
KXG20851	Sorghum	cytosol	38.04	47.18
KXG24320	Sorghum	cytosol	37.8	46.88
OQU77090	Sorghum	cytosol	24.16	45.5
OQU77089	Sorghum	cytosol	13.4	41.18
EES04595	Sorghum	plastid	39.95	40.44
KXG28726	Sorghum	cytosol	10.29	28.29
KXG19697	Sorghum	cytosol	5.98	25.77

Protein Annotations

KEGG:00010+1.2.1.12	KEGG:00710+1.2.1.12	MapMan:1.2.3	Gene3D:3.30.360.10	Gene3D:3.40.50.720	UniProt:A0A1B6PLD2
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005975	GO:GO:0006006
GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0016620	GO:GO:0050661	GO:GO:0051287
GO:GO:0055114	InterPro:GlycerAld/Erythrose_P_DH	InterPro:GlycerAld_3-P_DH_AS	InterPro:GlycerAld_3-P_DH_NAD(P)-bd	InterPro:GlycerAld_3-P_DH_cat	InterPro:Glyceraldehyde-3-P_DH_1
EnsemblPlants:KXG26468	ProteinID:KXG26468	ProteinID:KXG26468.1	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00044	PFAM:PF02800
PRINTS:PR00078	ScanProsite:PS00071	PANTHER:PTHR43148	PANTHER:PTHR43148:SF5	MetaCyc:PWY-1042	MetaCyc:PWY-5484
MetaCyc:PWY-6901	MetaCyc:PWY-7003	SMART:SM00846	EnsemblPlantsGene:SORBI_3006G105900	SUPFAM:SSF51735	SUPFAM:SSF55347
TIGRFAMs:TIGR01534	UniParc:UPI0002207154	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr6:+:47596390..47598743

Molecular Weight (calculated)

44499.5 Da

IEP (calculated)

8.125

GRAVY (calculated)

-0.001

Length

418 amino acids

Sequence
(BLAST)

001: MASSSMLSAT TVPLQVLRMP PSPAMPMLRG AAGLSEFSGL RSSASLPMRR NATSDDFMSA VSFRTHAVGT SGGSRRAPTE AKLKVAINGF GRIGRNFLRC
101: WHGRGDASPL EVIAINDTGG VKQASHLLKY DSTLGIFDAD VKPVGDNAIS VDGKVIKVVS DRNPSNLPWG EMGIDLVIEG TGVFVDREGA GKHIQAGAKK
201: VLITAPGKGD IPTYVVGVNA DQYDPDEPII SNASCTTNCL APFVKVLDQK FGIIKGTMTT THSYTGDQRL LDASHRDLRR ARAAALNIVP TSTGAAKAVS
301: LVLPNLKGKL NGIALRVPTP NVSVVDLVVQ VSKKTLAEEV NQAFRDAAAN ELSGILEVCD VPLVSVDFRC SDVSSTIDAS LTMVMGDDMV KVISWYDNEW
401: GYSQRVVDLA DICAIKWK

Best Arabidopsis Sequence Match ( AT1G12900.5 )
(BLAST)

001: MNDKAIQNLI FFASNSAIHI FLYYNSLPLL LTSYNKLLSL VAMASATFSV AKPSLQGFSE FSGLRNSSAL PFAKRSSSDE FVSFVSFQTS AMRSNGGYRK
101: GVTEAKIKVA INGFGRIGRN FLRCWHGRKD SPLDVVVIND TGGVKQASHL LKYDSTLGIF DADVKPSGDS ALSVDGKIIK IVSDRNPSNL PWGELGIDLV
201: IEGTGVFVDR DGAGKHLQAG AKKVLITAPG KGDIPTYVVG VNAELYSHED TIISNASCTT NCLAPFVKVL DQKFGIIKGT MTTTHSYTGD QRLLDASHRD
301: LRRARAAALN IVPTSTGAAK AVALVLPNLK GKLNGIALRV PTPNVSVVDL VVQVSKKTFA EEVNAAFRDA AEKELKGILD VCDEPLVSVD FRCSDVSSTI
401: DSSLTMVMGD DMVKVIAWYD NEWGYSQRVV DLADIVANNW K

Arabidopsis Description

GAPA-2glyceraldehyde 3-phosphate dehydrogenase A subunit 2 [Source:TAIR;Acc:AT1G12900]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.