CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, nucleus

Predictor Summary:

plastid 10
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
extracellular: 22945350

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 22945350 doi

C Liao, F Hochholdinger, C Li

Key Laboratory of Plant-Soil Interactions, Ministry of Education, Center for Resources, Environment and Food Security, China Agricultural University, Beijing, China.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG96526
KRH31794
KRH39632
KRH68260
KRH69219
KRH74288

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G26650.1	KRH39632	AT1G32060.1	17947231
AT3G26650.1	KRH74288	AT1G32060.1	17947231
AT3G26650.1	KRG96526	AT3G62410.1	17947231
AT3G26650.1	KRH31794	AT3G62410.1	17947231
AT3G26650.1	KRH68260	AT3G62410.1	17947231
AT3G26650.1	KRH69219	AT3G62410.1	17947231

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH06774	Soybean	nucleus	99.26	99.26
VIT_14s0068g00680.t01	Wine grape	plastid	89.83	89.6
CDY26599	Canola	plastid	87.84	88.72
CDY16038	Canola	plastid	87.59	88.47
Bra026948.1-P	Field mustard	plastid	87.34	88.22
CDX98028	Canola	plastid	87.34	88.22
CDY19412	Canola	plastid	87.34	88.22
Bra019797.1-P	Field mustard	plastid	87.1	87.97
CDY28536	Canola	plastid	82.88	87.89
Bra025219.1-P	Field mustard	plastid	82.63	87.63
AT3G26650.1	Thale cress	plastid	86.1	87.63
CDX83635	Canola	plastid	82.38	87.37
CDY13649	Canola	plastid	82.13	87.11
Os04t0459500-02	Rice	plastid	85.61	85.82
CDY48981	Canola	plastid	78.16	85.6
GSMUA_Achr10P...	Banana	plastid	66.25	85.03
Bra032939.1-P	Field mustard	plastid	70.47	85.03
Zm00001d003429_P001	Maize	plastid	84.86	84.86
TraesCS2D01G322900.1	Wheat	plastid	83.62	84.04
TraesCS2B01G342200.1	Wheat	plastid	83.62	84.04
TraesCS2A01G344600.1	Wheat	golgi, plastid	83.37	83.79
HORVU0Hr1G004830.6	Barley	plastid	83.37	82.35
KRH70104	Soybean	plastid	55.83	81.52
KXG26468	Sorghum	plastid	84.37	81.34
KRH08444	Soybean	cytosol	52.61	81.23
Zm00001d025607_P001	Maize	cytosol, plastid	72.7	78.76
AT1G12900.5	Thale cress	endoplasmic reticulum	86.1	78.68
Zm00001d025599_P001	Maize	plastid	78.16	78.16
Zm00001d025593_P001	Maize	plastid	77.42	77.42
GSMUA_Achr6P16250_001	Banana	plastid	84.12	77.4
KRH60895	Soybean	nucleus, plastid	73.2	65.41
KRH51576	Soybean	nucleus, plastid	73.2	65.12
KRH74912	Soybean	cytosol	19.85	57.14
KRH26225	Soybean	mitochondrion	37.47	47.63
KRH63725	Soybean	endoplasmic reticulum, nucleus	39.95	47.63
KRH54234	Soybean	endoplasmic reticulum, nucleus	39.7	47.34
KRH63724	Soybean	nucleus	39.7	47.34
KRH31426	Soybean	endoplasmic reticulum	39.7	47.06
KRG97466	Soybean	endoplasmic reticulum, nucleus	39.7	47.06
KRH54227	Soybean	endoplasmic reticulum, nucleus	39.45	47.04
KRH57621	Soybean	endoplasmic reticulum	38.71	46.29
KRG94350	Soybean	cytosol, mitochondrion	38.46	45.99
KRH66238	Soybean	plastid	44.66	43.06
KRH07324	Soybean	extracellular, nucleus	44.42	42.82
KRH37937	Soybean	plastid	6.2	28.41

Protein Annotations

KEGG:00010+1.2.1.12	KEGG:00710+1.2.1.12	MapMan:1.2.3	Gene3D:3.30.360.10	Gene3D:3.40.50.720	EntrezGene:732655
EMBL:ACUP02012030	EnsemblPlantsGene:GLYMA_19G106800	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005975	GO:GO:0006006	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0016620
GO:GO:0050661	GO:GO:0051287	GO:GO:0055114	InterPro:GlycerAld/Erythrose_P_DH	InterPro:GlycerAld_3-P_DH_AS	InterPro:GlycerAld_3-P_DH_NAD(P)-bd
InterPro:GlycerAld_3-P_DH_cat	InterPro:Glyceraldehyde-3-P_DH_1	UniProt:I1N843	EnsemblPlants:KRG94751	ProteinID:KRG94751	ProteinID:KRG94751.1
InterPro:NAD(P)-bd_dom_sf	PFAM:PF00044	PFAM:PF02800	PRINTS:PR00078	ScanProsite:PS00071	PANTHER:PTHR43148
PANTHER:PTHR43148:SF5	MetaCyc:PWY-1042	MetaCyc:PWY-5484	MetaCyc:PWY-6901	MetaCyc:PWY-7003	SMART:SM00846
SUPFAM:SSF51735	SUPFAM:SSF55347	TIGRFAMs:TIGR01534	UniParc:UPI0001CAA33D	SEG:seg	:

Description

hypothetical protein

Coordinates

chr19:-:35815423..35818272

Molecular Weight (calculated)

43189.6 Da

IEP (calculated)

8.442

GRAVY (calculated)

-0.059

Length

403 amino acids

Sequence
(BLAST)

001: MASATLSVAK PALQANGKGF SEFSGLRSSS GFLPFSRKSS EDFHSVIAFQ TYAVGSSGGY KKGVTEAKLK VAINGFGRIG RNFLRCWHGR KDSPLDVIAI
101: NDTGGVKQAS HLLKYDSILG TFDADVKPVG SNVISVDGKE IKVVSDRNPA NLPWKDLGID LVIEGTGVFV DREGAGKHIQ AGAKKVLITA PGKGDIPTYV
201: VGVNEYDYSP DEPIISNASC TTNCLAPFVK VLDQKFGIIK GTMTTTHSYT GDQRLLDASH RDLRRARAAA LNIVPTSTGA AKAVALVLPT LKGKLNGIAL
301: RVPTPNVSVV DLVVQVSKKT FAEEVNAAFR ESADNELKGI LSVCDEPLVS VDFRCTDVSS TVDSSLTMVM GDDMVKVIAW YDNEWGYSQR VVDLADIVAN
401: KWK

Best Arabidopsis Sequence Match ( AT1G12900.5 )
(BLAST)

001: MNDKAIQNLI FFASNSAIHI FLYYNSLPLL LTSYNKLLSL VAMASATFSV AKPSLQGFSE FSGLRNSSAL PFAKRSSSDE FVSFVSFQTS AMRSNGGYRK
101: GVTEAKIKVA INGFGRIGRN FLRCWHGRKD SPLDVVVIND TGGVKQASHL LKYDSTLGIF DADVKPSGDS ALSVDGKIIK IVSDRNPSNL PWGELGIDLV
201: IEGTGVFVDR DGAGKHLQAG AKKVLITAPG KGDIPTYVVG VNAELYSHED TIISNASCTT NCLAPFVKVL DQKFGIIKGT MTTTHSYTGD QRLLDASHRD
301: LRRARAAALN IVPTSTGAAK AVALVLPNLK GKLNGIALRV PTPNVSVVDL VVQVSKKTFA EEVNAAFRDA AEKELKGILD VCDEPLVSVD FRCSDVSSTI
401: DSSLTMVMGD DMVKVIAWYD NEWGYSQRVV DLADIVANNW K

Arabidopsis Description

GAPA-2glyceraldehyde 3-phosphate dehydrogenase A subunit 2 [Source:TAIR;Acc:AT1G12900]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.