Factsheet for Zm00001d003429_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 20089766
plastid: 22065420
extracellular: 22192489
plastid: 23198870
cytosol: 28250383

msms PMID: 28250383 doi

CN Meisrimler, F Buck, S Lüthje

University Hospital Eppendorf, Institute of Clinical Chemistry, Campus Science, Martinistraße 52, D-20246 Hamburg, Germany. buck@uke.de., University of Hamburg, Biocenter Klein Flottbek and Botanical Garden, Oxidative Stress and Plant Proteomics Group, Ohnhorststraße 18, D-22609 Hamburg, Germany. c_m_2406@yahoo.de., University of Hamburg, Biocenter Klein Flottbek and Botanical Garden, Oxidative Stress and Plant Proteomics Group, Ohnhorststraße 18, D-22609 Hamburg, Germany. s.luthje@botanik.uni-hamburg.de.

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 22192489 doi

K Witzel, M Shahzad, A Matros, HP Mock, KH Mühling

Institute of Plant Nutrition and Soil Science, Christian Albrechts University, Hermann-Rodewald-Strasse 2, 24118 Kiel, Germany. khmuehling@plantnutrition.uni-kiel.de.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d002454_P002
Zm00001d028880_P001
Zm00001d044925_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G26650.1	Zm00001d002454_P002	AT1G32060.1	17947231
AT3G26650.1	Zm00001d028880_P001	AT3G62410.1	17947231
AT3G26650.1	Zm00001d044925_P001	AT3G62410.1	17947231

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os04t0459500-02	Rice	plastid	95.53	95.77
KXG26468	Sorghum	plastid	97.77	94.26
TraesCS2B01G342200.1	Wheat	plastid	91.56	92.02
TraesCS2D01G322900.1	Wheat	plastid	91.56	92.02
TraesCS2A01G344600.1	Wheat	golgi, plastid	91.32	91.77
HORVU0Hr1G004830.6	Barley	plastid	91.32	90.2
Zm00001d025607_P001	Maize	cytosol, plastid	82.88	89.78
Zm00001d025599_P001	Maize	plastid	89.33	89.33
Zm00001d025593_P001	Maize	plastid	88.59	88.59
Bra026948.1-P	Field mustard	plastid	85.61	86.47
CDY16038	Canola	plastid	85.11	85.96
CDY26599	Canola	plastid	85.11	85.96
CDX98028	Canola	plastid	84.86	85.71
CDY19412	Canola	plastid	84.86	85.71
CDY28536	Canola	plastid	80.65	85.53
Bra019797.1-P	Field mustard	plastid	84.62	85.46
AT3G26650.1	Thale cress	plastid	83.87	85.35
CDY13649	Canola	plastid	80.4	85.26
CDX83635	Canola	plastid	80.4	85.26
Bra025219.1-P	Field mustard	plastid	80.4	85.26
GSMUA_Achr10P...	Banana	plastid	66.25	85.03
KRG94751	Soybean	extracellular, nucleus	84.86	84.86
KRH06774	Soybean	nucleus	84.62	84.62
PGSC0003DMT400030050	Potato	cytosol	83.62	84.46
Solyc04g009030.2.1	Tomato	plastid	83.13	83.96
Bra032939.1-P	Field mustard	plastid	69.48	83.83
VIT_14s0068g00680.t01	Wine grape	plastid	83.37	83.17
CDY48981	Canola	plastid	75.93	83.15
Solyc02g020940.2.1	Tomato	plastid	81.64	80.44
GSMUA_Achr6P16250_001	Banana	plastid	84.12	77.4
AT1G12900.5	Thale cress	endoplasmic reticulum	83.87	76.64
KRH70104	Soybean	plastid	49.63	72.46
Zm00001d027488_P001	Maize	extracellular, plastid	71.96	64.59
Zm00001d025601_P001	Maize	plastid	21.84	51.46
Zm00001d051001_P002	Maize	cytosol	39.21	46.88
Zm00001d049641_P001	Maize	plasma membrane, plastid	38.96	46.59
Zm00001d035156_P003	Maize	cytosol	39.21	45.27
Zm00001d015383_P001	Maize	plastid	41.44	39.86
Zm00001d053798_P004	Maize	plastid	38.96	37.83
Zm00001d017121_P001	Maize	plastid	39.21	30.98
Zm00001d015885_P001	Maize	mitochondrion	11.17	29.61
Zm00001d019945_P001	Maize	plastid	6.95	25.23
Zm00001d021798_P001	Maize	cytosol	13.65	21.15
Zm00001d016297_P001	Maize	cytosol	6.7	19.71

Protein Annotations

KEGG:00010+1.2.1.12	KEGG:00710+1.2.1.12	MapMan:1.2.3	Gene3D:3.30.360.10	Gene3D:3.40.50.720	UniProt:A0A1D6E965
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005975	GO:GO:0006006	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009416	GO:GO:0009507	GO:GO:0009536	GO:GO:0009628	GO:GO:0009987
GO:GO:0015979	GO:GO:0016491	GO:GO:0016620	GO:GO:0019253	GO:GO:0047100	GO:GO:0050661
GO:GO:0051287	GO:GO:0055114	InterPro:GlycerAld/Erythrose_P_DH	InterPro:GlycerAld_3-P_DH_AS	InterPro:GlycerAld_3-P_DH_NAD(P)-bd	InterPro:GlycerAld_3-P_DH_cat
InterPro:Glyceraldehyde-3-P_DH_1	InterPro:NAD(P)-bd_dom_sf	ProteinID:ONM16940.1	PFAM:PF00044	PFAM:PF02800	PRINTS:PR00078
ScanProsite:PS00071	PANTHER:PTHR43148	PANTHER:PTHR43148:SF5	SMART:SM00846	SUPFAM:SSF51735	SUPFAM:SSF55347
TIGRFAMs:TIGR01534	UniParc:UPI0001CAB5D8	EnsemblPlantsGene:Zm00001d003429	EnsemblPlants:Zm00001d003429_P001	EnsemblPlants:Zm00001d003429_T001	SEG:seg

Description

glyceraldehyde-3-phosphate dehydrogenase1Glyceraldehyde-3-phosphate dehydrogenase A%2C chloroplastic

Coordinates

chr2:-:44100341..44102181

Molecular Weight (calculated)

42859.2 Da

IEP (calculated)

7.465

GRAVY (calculated)

-0.040

Length

403 amino acids

Sequence
(BLAST)

001: MASSMLSATT VPLQQGGGLS EFSGLRSSAS LPMRRNATSD DFMSAVSFRT HAVGTSGGSR RAPTEAKLKV AINGFGRIGR NFLRCWHGRG DASPLDVIAI
101: NDTGGVKQAS HLLKYDSTLG IFDADVKPVG DNAISVDGKV IKVVSDRNPS NLPWGELGID LVIEGTGVFV DREGAGKHIQ AGAKKVLITA PGKGDIPTYV
201: VGVNADQYNP DEPIISNASC TTNCLAPFVK VLDQKFGIIK GTMTTTHSYT GDQRLLDASH RDLRRARAAA LNIVPTSTGA AKAVSLVLPN LKGKLNGIAL
301: RVPTPNVSVV DLVVQVSKKT LAEEVNQAFR DAAANELTGI LEVCDVPLVS VDFRCSDVSS TIDASLTMVM GDDMVKVISW YDNEWGYSQR VVDLADICAN
401: QWK

Best Arabidopsis Sequence Match ( AT1G12900.5 )
(BLAST)

001: MNDKAIQNLI FFASNSAIHI FLYYNSLPLL LTSYNKLLSL VAMASATFSV AKPSLQGFSE FSGLRNSSAL PFAKRSSSDE FVSFVSFQTS AMRSNGGYRK
101: GVTEAKIKVA INGFGRIGRN FLRCWHGRKD SPLDVVVIND TGGVKQASHL LKYDSTLGIF DADVKPSGDS ALSVDGKIIK IVSDRNPSNL PWGELGIDLV
201: IEGTGVFVDR DGAGKHLQAG AKKVLITAPG KGDIPTYVVG VNAELYSHED TIISNASCTT NCLAPFVKVL DQKFGIIKGT MTTTHSYTGD QRLLDASHRD
301: LRRARAAALN IVPTSTGAAK AVALVLPNLK GKLNGIALRV PTPNVSVVDL VVQVSKKTFA EEVNAAFRDA AEKELKGILD VCDEPLVSVD FRCSDVSSTI
401: DSSLTMVMGD DMVKVIAWYD NEWGYSQRVV DLADIVANNW K

Arabidopsis Description

GAPA-2glyceraldehyde 3-phosphate dehydrogenase A subunit 2 [Source:TAIR;Acc:AT1G12900]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.