CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG96526
KRH31794
KRH39632
KRH68260
KRH69219
KRH74288

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G26650.1	KRH39632	AT1G32060.1	17947231
AT3G26650.1	KRH74288	AT1G32060.1	17947231
AT3G26650.1	KRG96526	AT3G62410.1	17947231
AT3G26650.1	KRH31794	AT3G62410.1	17947231
AT3G26650.1	KRH68260	AT3G62410.1	17947231
AT3G26650.1	KRH69219	AT3G62410.1	17947231

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG94751	Soybean	extracellular, nucleus	81.52	55.83
KRH06774	Soybean	nucleus	81.16	55.58
VIT_14s0068g00680.t01	Wine grape	plastid	78.62	53.71
Bra026948.1-P	Field mustard	plastid	75.72	52.38
Bra019797.1-P	Field mustard	plastid	75.36	52.13
Solyc04g009030.2.1	Tomato	plastid	75.36	52.13
CDX98028	Canola	plastid	75.36	52.13
CDY16038	Canola	plastid	75.36	52.13
CDY19412	Canola	plastid	75.36	52.13
CDY26599	Canola	plastid	75.36	52.13
AT3G26650.1	Thale cress	plastid	74.64	52.02
PGSC0003DMT400030050	Potato	cytosol	74.28	51.38
GSMUA_Achr10P...	Banana	plastid	58.33	51.27
CDX83635	Canola	plastid	70.29	51.05
CDY28536	Canola	plastid	69.93	50.79
Bra025219.1-P	Field mustard	plastid	69.93	50.79
CDY13649	Canola	plastid	69.57	50.53
Os04t0459500-02	Rice	plastid	73.19	50.25
Solyc02g020940.2.1	Tomato	plastid	74.28	50.12
Zm00001d003429_P001	Maize	plastid	72.46	49.63
CDY48981	Canola	plastid	65.94	49.46
TraesCS2D01G322900.1	Wheat	plastid	69.93	48.13
TraesCS2B01G342200.1	Wheat	plastid	69.93	48.13
TraesCS2A01G344600.1	Wheat	golgi, plastid	69.93	48.13
KXG26468	Sorghum	plastid	72.46	47.85
HORVU0Hr1G004830.6	Barley	plastid	69.57	47.06
AT1G12900.5	Thale cress	endoplasmic reticulum	75.0	46.94
GSMUA_Achr6P16250_001	Banana	plastid	74.28	46.8
Zm00001d025607_P001	Maize	cytosol, plastid	62.68	46.51
Zm00001d025599_P001	Maize	plastid	67.75	46.4
Bra032939.1-P	Field mustard	plastid	55.8	46.11
Zm00001d025593_P001	Maize	plastid	67.03	45.91
KRH08444	Soybean	cytosol	42.39	44.83
KRH60895	Soybean	nucleus, plastid	63.77	39.02
KRH51576	Soybean	nucleus, plastid	63.77	38.85
KRH26225	Soybean	mitochondrion	33.33	29.02
KRH74912	Soybean	cytosol	14.49	28.57
KRH54234	Soybean	endoplasmic reticulum, nucleus	32.97	26.92
KRH54227	Soybean	endoplasmic reticulum, nucleus	32.97	26.92
KRH63725	Soybean	endoplasmic reticulum, nucleus	32.97	26.92
KRH63724	Soybean	nucleus	32.97	26.92
KRH31426	Soybean	endoplasmic reticulum	32.61	26.47
KRG97466	Soybean	endoplasmic reticulum, nucleus	32.61	26.47
KRH57621	Soybean	endoplasmic reticulum	32.25	26.41
KRG94350	Soybean	cytosol, mitochondrion	31.88	26.11
KRH66238	Soybean	plastid	35.51	23.45
KRH07324	Soybean	extracellular, nucleus	35.51	23.45
KRH37937	Soybean	plastid	2.54	7.95

Protein Annotations

Gene3D:3.30.360.10	Gene3D:3.40.50.720	MapMan:35.1	EMBL:ACUP02000747	EnsemblPlantsGene:GLYMA_02G068800	GO:GO:0003674
GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0016620	GO:GO:0055114	InterPro:GlycerAld_3-P_DH_NAD(P)-bd
InterPro:GlycerAld_3-P_DH_cat	UniProt:K7K6U6	EnsemblPlants:KRH70104	ProteinID:KRH70104	ProteinID:KRH70104.1	InterPro:NAD(P)-bd_dom_sf
PFAM:PF00044	PFAM:PF02800	PANTHER:PTHR43148	PANTHER:PTHR43148:SF5	SMART:SM00846	SUPFAM:SSF51735
SUPFAM:SSF55347	UniParc:UPI0002954575	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:6042913..6045756

Molecular Weight (calculated)

29256.6 Da

IEP (calculated)

8.242

GRAVY (calculated)

-0.154

Length

276 amino acids

Sequence
(BLAST)

001: MQANGKGFSE FSGLRNSSIG YLSFSSRKSS EDFHSVIAFQ TSAVGGREGN TKGVVEAKLK VAINGFGRIG RNFLRCWNGR KDSPLHIIAI NDTTGGVKQA
101: SQASLSQGLG NRLLIEGTGV FVDRDGAGKH IQAGAKKILI TAPGKGDIPT YVVGVNAGIY DPDEPIISNA SNMRLPNTTH SYGDQRLLDV SHRNLRHARA
201: AVLNIVPTSS GAAKAVALTF AEEVNAAFRE SAENELKGIL SVFDEPLVSV DFRCSDVSST VDSSLTVVMG DDMVGQ

Best Arabidopsis Sequence Match ( AT1G12900.1 )
(BLAST)

001: MASATFSVAK PSLQGFSEFS GLRNSSALPF AKRSSSDEFV SFVSFQTSAM RSNGGYRKGV TEAKIKVAIN GFGRIGRNFL RCWHGRKDSP LDVVVINDTG
101: GVKQASHLLK YDSTLGIFDA DVKPSGDSAL SVDGKIIKIV SDRNPSNLPW GELGIDLVIE GTGVFVDRDG AGKHLQAGAK KVLITAPGKG DIPTYVVGVN
201: AELYSHEDTI ISNASCTTNC LAPFVKVLDQ KFGIIKGTMT TTHSYTGDQR LLDASHRDLR RARAAALNIV PTSTGAAKAV ALVLPNLKGK LNGIALRVPT
301: PNVSVVDLVV QVSKKTFAEE VNAAFRDAAE KELKGILDVC DEPLVSVDFR CSDVSSTIDS SLTMVMGDDM VKVIAWYDNE WGYSQRVVDL ADIVANNWK

Arabidopsis Description

GAPA-2glyceraldehyde 3-phosphate dehydrogenase A subunit 2 [Source:TAIR;Acc:AT1G12900]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.