Factsheet for TraesCS2D01G322900.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

plastid: 18071923
plastid: 22160430
plastid: 22736107
golgi: 25769308

msms PMID: 22736107 doi

AH Kamal, K Cho, DE Kim, N Uozumi, KY Chung, SY Lee, JS Choi, SW Cho, CS Shin, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk 361-763, Korea.

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 18071923 doi

LA Blomqvist, M Ryberg, C Sundqvist

Department of Plant and Environmental Sciences, Göteborg University, P.O. Box 461, 405 30 Göteborg, Sweden.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G035100.1
TraesCS2B01G048200.1
TraesCS2D01G034400.1
TraesCS4A01G120600.1
TraesCS4B01G184400.1
TraesCS4D01G185400.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G26650.1	TraesCS2A01G035100.1	AT3G62410.1	17947231
AT3G26650.1	TraesCS2B01G048200.1	AT3G62410.1	17947231
AT3G26650.1	TraesCS2D01G034400.1	AT3G62410.1	17947231
AT3G26650.1	TraesCS4A01G120600.1	AT3G62410.1	17947231
AT3G26650.1	TraesCS4B01G184400.1	AT3G62410.1	17947231
AT3G26650.1	TraesCS4D01G185400.1	AT3G62410.1	17947231

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G342200.1	Wheat	plastid	100.0	100.0
TraesCS2A01G344600.1	Wheat	golgi, plastid	99.75	99.75
HORVU0Hr1G004830.6	Barley	plastid	99.75	98.04
Os04t0459500-02	Rice	plastid	93.27	93.03
Zm00001d003429_P001	Maize	plastid	92.02	91.56
KXG26468	Sorghum	plastid	91.77	88.04
Bra026948.1-P	Field mustard	plastid	87.03	87.47
CDY16038	Canola	plastid	87.03	87.47
CDY26599	Canola	plastid	87.03	87.47
CDX98028	Canola	plastid	86.28	86.72
CDY19412	Canola	plastid	86.28	86.72
Bra019797.1-P	Field mustard	plastid	86.03	86.47
AT3G26650.1	Thale cress	plastid	84.29	85.35
Zm00001d025607_P001	Maize	cytosol, plastid	78.3	84.41
CDY28536	Canola	plastid	79.8	84.21
CDY13649	Canola	plastid	79.55	83.95
CDX83635	Canola	plastid	79.55	83.95
Bra025219.1-P	Field mustard	plastid	79.55	83.95
KRG94751	Soybean	extracellular, nucleus	84.04	83.62
Zm00001d025599_P001	Maize	plastid	83.79	83.37
KRH06774	Soybean	nucleus	83.54	83.13
PGSC0003DMT400030050	Potato	cytosol	82.54	82.96
CDY48981	Canola	plastid	76.06	82.88
Solyc04g009030.2.1	Tomato	plastid	82.29	82.71
Bra032939.1-P	Field mustard	plastid	68.83	82.63
Zm00001d025593_P001	Maize	plastid	83.04	82.63
VIT_14s0068g00680.t01	Wine grape	plastid	83.04	82.43
GSMUA_Achr10P...	Banana	plastid	64.34	82.17
Solyc02g020940.2.1	Tomato	plastid	81.05	79.46
AT1G12900.5	Thale cress	endoplasmic reticulum	86.28	78.46
GSMUA_Achr6P16250_001	Banana	plastid	83.29	76.26
KRH70104	Soybean	plastid	48.13	69.93
TraesCS4D01G319400.1	Wheat	plastid	72.07	65.09
TraesCS7D01G309500.1	Wheat	cytosol	40.4	48.07
TraesCS6D01G196300.2	Wheat	golgi, nucleus	39.4	46.88
TraesCS6D01G146900.1	Wheat	plastid	43.39	41.83
TraesCS7D01G465500.1	Wheat	plastid	42.14	39.12
TraesCS3D01G063600.1	Wheat	plastid	26.68	18.38

Protein Annotations

KEGG:00010+1.2.1.12	KEGG:00710+1.2.1.12	MapMan:1.2.3	Gene3D:3.30.360.10	Gene3D:3.40.50.720	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005975	GO:GO:0006006	GO:GO:0008150
GO:GO:0008152	GO:GO:0016620	GO:GO:0050661	GO:GO:0051287	GO:GO:0055114	InterPro:GlycerAld/Erythrose_P_DH
InterPro:GlycerAld_3-P_DH_AS	InterPro:GlycerAld_3-P_DH_NAD(P)-bd	InterPro:GlycerAld_3-P_DH_cat	InterPro:Glyceraldehyde-3-P_DH_1	InterPro:NAD(P)-bd_dom_sf	PFAM:PF00044
PFAM:PF02800	PIRSF:PIRSF000149	PRINTS:PR00078	ScanProsite:PS00071	PANTHER:PTHR43148	PANTHER:PTHR43148:SF5
SMART:SM00846	SUPFAM:SSF51735	SUPFAM:SSF55347	TIGRFAMs:TIGR01534	EnsemblPlantsGene:TraesCS2D01G322900	EnsemblPlants:TraesCS2D01G322900.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr2D:+:414955071..414956541

Molecular Weight (calculated)

42702.2 Da

IEP (calculated)

7.833

GRAVY (calculated)

0.001

Length

401 amino acids

Sequence
(BLAST)

001: MASPMLSTAM APLQGGMLEF SGLRSSSSLP LRRNATSDDF MSAVSFRTYA VSTSGGSRKA PTEAKLKVAI NGFGRIGRNF LRCWHGRGDS SPLEVIAIND
101: TGGVKQASHL LKYDSTLGIF DADVKPVGDN AISVDGKVIK VVSDRNPSNL PWGEMGIDLV IEGTGVFVDR AGAGKHLEAG AKKVLITAPG KGDIPTYVCG
201: VNADLYTHAD TIISNASCTT NCLAPFVKVL DQKFGIIKGT MTTTHSYTGD QRLLDASHRD LRRARAAALN IVPTSTGAAK AVALVLPNLK GKLNGIALRV
301: PTPNVSVVDL VVQVSKKTLA EEVNQAFRDA AANELKGILD VCDEPLVSVD FRCSDVSSTI DASLSMVMGD DMVKVIAWYD NEWGYSQRVV DLADIVANQW
401: K

Best Arabidopsis Sequence Match ( AT1G12900.5 )
(BLAST)

001: MNDKAIQNLI FFASNSAIHI FLYYNSLPLL LTSYNKLLSL VAMASATFSV AKPSLQGFSE FSGLRNSSAL PFAKRSSSDE FVSFVSFQTS AMRSNGGYRK
101: GVTEAKIKVA INGFGRIGRN FLRCWHGRKD SPLDVVVIND TGGVKQASHL LKYDSTLGIF DADVKPSGDS ALSVDGKIIK IVSDRNPSNL PWGELGIDLV
201: IEGTGVFVDR DGAGKHLQAG AKKVLITAPG KGDIPTYVVG VNAELYSHED TIISNASCTT NCLAPFVKVL DQKFGIIKGT MTTTHSYTGD QRLLDASHRD
301: LRRARAAALN IVPTSTGAAK AVALVLPNLK GKLNGIALRV PTPNVSVVDL VVQVSKKTFA EEVNAAFRDA AEKELKGILD VCDEPLVSVD FRCSDVSSTI
401: DSSLTMVMGD DMVKVIAWYD NEWGYSQRVV DLADIVANNW K

Arabidopsis Description

GAPA-2glyceraldehyde 3-phosphate dehydrogenase A subunit 2 [Source:TAIR;Acc:AT1G12900]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.