Factsheet for Zm00001d025607_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

mitochondrion 2
plastid 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, mitochondrion, plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d002454_P002
Zm00001d028880_P001
Zm00001d044925_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G26650.1	Zm00001d002454_P002	AT1G32060.1	17947231
AT3G26650.1	Zm00001d028880_P001	AT3G62410.1	17947231
AT3G26650.1	Zm00001d044925_P001	AT3G62410.1	17947231

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d025599_P001	Maize	plastid	96.77	89.33
Zm00001d025593_P001	Maize	plastid	95.97	88.59
Zm00001d003429_P001	Maize	plastid	89.78	82.88
Os04t0459500-02	Rice	plastid	87.37	80.85
KXG26468	Sorghum	plastid	88.44	78.71
TraesCS2B01G342200.1	Wheat	plastid	84.41	78.3
TraesCS2D01G322900.1	Wheat	plastid	84.41	78.3
TraesCS2A01G344600.1	Wheat	golgi, plastid	84.14	78.05
HORVU0Hr1G004830.6	Barley	plastid	84.14	76.72
Bra026948.1-P	Field mustard	plastid	81.18	75.69
CDY26599	Canola	plastid	80.91	75.44
AT3G26650.1	Thale cress	plastid	80.11	75.25
CDY19412	Canola	plastid	80.65	75.19
CDY16038	Canola	plastid	80.65	75.19
CDX98028	Canola	plastid	80.65	75.19
Bra019797.1-P	Field mustard	plastid	80.38	74.94
CDY13649	Canola	plastid	76.34	74.74
Bra025219.1-P	Field mustard	plastid	76.34	74.74
CDY28536	Canola	plastid	76.08	74.47
CDX83635	Canola	plastid	76.08	74.47
PGSC0003DMT400030050	Potato	cytosol	79.3	73.93
Solyc04g009030.2.1	Tomato	plastid	79.3	73.93
KRH06774	Soybean	nucleus	78.76	72.7
KRG94751	Soybean	extracellular, nucleus	78.76	72.7
VIT_14s0068g00680.t01	Wine grape	plastid	78.76	72.52
Bra032939.1-P	Field mustard	plastid	64.78	72.16
CDY48981	Canola	plastid	71.24	72.01
Solyc02g020940.2.1	Tomato	plastid	78.49	71.39
GSMUA_Achr10P...	Banana	plastid	59.95	71.02
GSMUA_Achr6P16250_001	Banana	plastid	80.38	68.26
AT1G12900.5	Thale cress	endoplasmic reticulum	79.3	66.89
KRH70104	Soybean	plastid	46.51	62.68
Zm00001d027488_P001	Maize	extracellular, plastid	70.16	58.13
Zm00001d025601_P001	Maize	plastid	24.73	53.8
Zm00001d049641_P001	Maize	plasma membrane, plastid	39.52	43.62
Zm00001d051001_P002	Maize	cytosol	38.71	42.73
Zm00001d035156_P003	Maize	cytosol	39.52	42.12
Zm00001d015383_P001	Maize	plastid	39.78	35.32
Zm00001d053798_P004	Maize	plastid	37.63	33.73
Zm00001d015885_P001	Maize	mitochondrion	11.56	28.29
Zm00001d017121_P001	Maize	plastid	38.71	28.24
Zm00001d019945_P001	Maize	plastid	6.72	22.52
Zm00001d021798_P001	Maize	cytosol	13.17	18.85
Zm00001d016297_P001	Maize	cytosol	6.72	18.25

Protein Annotations

KEGG:00010+1.2.1.12	KEGG:00710+1.2.1.12	MapMan:1.2.3	Gene3D:3.30.360.10	Gene3D:3.40.50.720	ProteinID:AQK44076.1
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005975	GO:GO:0006006
GO:GO:0008150	GO:GO:0008152	GO:GO:0016620	GO:GO:0050661	GO:GO:0051287	GO:GO:0055114
InterPro:GlycerAld/Erythrose_P_DH	InterPro:GlycerAld_3-P_DH_NAD(P)-bd	InterPro:GlycerAld_3-P_DH_cat	InterPro:Glyceraldehyde-3-P_DH_1	UniProt:K7TPS7	InterPro:NAD(P)-bd_dom_sf
PFAM:PF00044	PFAM:PF02800	PIRSF:PIRSF000149	PRINTS:PR00078	PANTHER:PTHR43148	PANTHER:PTHR43148:SF5
SMART:SM00846	SUPFAM:SSF51735	SUPFAM:SSF55347	TIGRFAMs:TIGR01534	UniParc:UPI0002209E1C	EnsemblPlantsGene:Zm00001d025607
EnsemblPlants:Zm00001d025607_P001	EnsemblPlants:Zm00001d025607_T001	SEG:seg	:	:	:

Description

Glyceraldehyde-3-phosphate dehydrogenase GAPA1 chloroplastic

Coordinates

chr10:+:123736147..123737630

Molecular Weight (calculated)

40864.7 Da

IEP (calculated)

5.929

GRAVY (calculated)

-0.106

Length

372 amino acids

Sequence
(BLAST)

001: MRWNATSDEF MSAVSFRNHA IGTSGGRLRR APTEAKLKVA INGFGRIRRN FLRCWHGRDD DSPLDVIAIN DTGDVKQASH LLKYDSLLGI FDADAELVGD
101: NAISVDDKVI KVVSDRNPSN LPWGELSVDL FIEGTGVFVD HEGAGKHIQV GAKKVLITAP DKGNIPTYVV GVNADQYNPD EPIISNTSCT TNCRVPFVKV
201: LDQKFGIIKG TMTTTHFYTC DQRLLDASHR DLRRARAAAL NIVPTSTSAA KAVVLVLPNL KGKLNGIALW VPTPNVSVLD LVVQVSRKTL AEEVNQAFRD
301: AAANELQGIL EVCDVPLVSV DFRCSDFSST IDASLTMVMG DDMVKVISWY DKEWGYSQRV VDLDDICANQ WK

Best Arabidopsis Sequence Match ( AT3G26650.1 )
(BLAST)

001: MASVTFSVPK GFTEFSGLRS SSASLPFGKK LSSDEFVSIV SFQTSAMGSS GGYRKGVTEA KLKVAINGFG RIGRNFLRCW HGRKDSPLDI IAINDTGGVK
101: QASHLLKYDS TLGIFDADVK PSGETAISVD GKIIQVVSNR NPSLLPWKEL GIDIVIEGTG VFVDREGAGK HIEAGAKKVI ITAPGKGDIP TYVVGVNADA
201: YSHDEPIISN ASCTTNCLAP FVKVLDQKFG IIKGTMTTTH SYTGDQRLLD ASHRDLRRAR AAALNIVPTS TGAAKAVALV LPNLKGKLNG IALRVPTPNV
301: SVVDLVVQVS KKTFAEEVNA AFRDSAEKEL KGILDVCDEP LVSVDFRCSD FSTTIDSSLT MVMGDDMVKV IAWYDNEWGY SQRVVDLADI VANNWK

Arabidopsis Description

GAPA1Glyceraldehyde-3-phosphate dehydrogenase GAPA1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P25856]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.