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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 7
PPI

Inferred distinct locusB in Crop

locusBlocations
HORVU4Hr1G053940.2

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G26650.1 HORVU4Hr1G053940.2 AT3G62410.1 17947231
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS2D01G322900.1 Wheat plastid 98.04 99.75
TraesCS2B01G342200.1 Wheat plastid 98.04 99.75
TraesCS2A01G344600.1 Wheat golgi, plastid 97.79 99.5
Os04t0459500-02 Rice plastid 91.42 92.79
Zm00001d003429_P001 Maize plastid 90.2 91.32
KXG26468 Sorghum plastid 89.95 87.8
Bra026948.1-P Field mustard plastid 85.29 87.22
CDY16038 Canola plastid 85.29 87.22
CDY26599 Canola plastid 85.29 87.22
CDX98028 Canola plastid 84.56 86.47
CDY19412 Canola plastid 84.56 86.47
Bra019797.1-P Field mustard plastid 84.31 86.22
AT3G26650.1 Thale cress plastid 82.6 85.1
Zm00001d025607_P001 Maize cytosol, plastid 76.72 84.14
CDY28536 Canola plastid 78.19 83.95
Bra025219.1-P Field mustard plastid 77.94 83.68
CDY13649 Canola plastid 77.94 83.68
CDX83635 Canola plastid 77.94 83.68
KRG94751 Soybean extracellular, nucleus 82.35 83.37
Zm00001d025599_P001 Maize plastid 82.11 83.13
KRH06774 Soybean nucleus 81.86 82.88
PGSC0003DMT400030050 Potato cytosol 80.88 82.71
CDY48981 Canola plastid 74.51 82.61
Solyc04g009030.2.1 Tomato plastid 80.64 82.46
Zm00001d025593_P001 Maize plastid 81.37 82.38
Bra032939.1-P Field mustard plastid 67.4 82.34
VIT_14s0068g00680.t01 Wine grape plastid 81.37 82.18
GSMUA_Achr10P... Banana plastid 62.99 81.85
Solyc02g020940.2.1 Tomato plastid 79.66 79.46
AT1G12900.5 Thale cress endoplasmic reticulum 84.56 78.23
GSMUA_Achr6P16250_001 Banana plastid 81.62 76.03
KRH70104 Soybean plastid 47.06 69.57
HORVU4Hr1G082700.4 Barley plastid 70.83 65.09
HORVU2Hr1G123240.1 Barley cytosol 4.66 50.0
HORVU2Hr1G123170.1 Barley cytosol 4.66 50.0
HORVU6Hr1G089870.1 Barley cytosol 4.9 47.62
HORVU6Hr1G054520.3 Barley cytosol, mitochondrion 38.97 43.68
HORVU6Hr1G032070.2 Barley plastid 42.89 42.07
HORVU7Hr1G074690.3 Barley extracellular, plasma membrane 39.71 41.22
HORVU7Hr1G108580.4 Barley plastid 36.76 36.59
HORVU3Hr1G092890.1 Barley plastid 22.79 16.09
Protein Annotations
KEGG:00010+1.2.1.12KEGG:00710+1.2.1.12MapMan:1.2.3Gene3D:3.30.360.10Gene3D:3.40.50.720UniProt:A0A287DVV6
GO:GO:0000166GO:GO:0003674GO:GO:0003824GO:GO:0005488GO:GO:0005975GO:GO:0006006
GO:GO:0008150GO:GO:0008152GO:GO:0016491GO:GO:0016620GO:GO:0050661GO:GO:0051287
GO:GO:0055114InterPro:GlycerAld/Erythrose_P_DHInterPro:GlycerAld_3-P_DH_ASInterPro:GlycerAld_3-P_DH_NAD(P)-bdInterPro:GlycerAld_3-P_DH_catInterPro:Glyceraldehyde-3-P_DH_1
EnsemblPlantsGene:HORVU0Hr1G004830EnsemblPlants:HORVU0Hr1G004830.6InterPro:NAD(P)-bd_dom_sfPFAM:PF00044PFAM:PF02800PRINTS:PR00078
ScanProsite:PS00071PANTHER:PTHR43148PANTHER:PTHR43148:SF5SMART:SM00846SUPFAM:SSF51735SUPFAM:SSF55347
TIGRFAMs:TIGR01534UniParc:UPI000B471EB7SEG:seg:::
Description
Glyceraldehyde-3-phosphate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:A0A287DVV6]
Coordinates
chrchrUn:+:27943628..27945139
Molecular Weight (calculated)
43725.5 Da
IEP (calculated)
8.568
GRAVY (calculated)
-0.017
Length
408 amino acids
Sequence
(BLAST)
001: MASPMLSTAM APLQGGMLEF SGLRSSSSLP LRRNATSDDF MSAVSFRTYR RVVRWLQVST SGGSRKAPTE AKLKVAINGF GRIGRNFLRC WHGRGDSSPL
101: EVIAINDTGG VKQASHLLKY DSTLGIFDAD VKPVGDNAIS VDGKVIKVVS DRNPSNLPWG EMGIDLVIEG TGVFVDRAGA GKHLEAGAKK VLITAPGKGD
201: IPTYVCGVNA DLYTHADTII SNASCTTNCL APFVKVLDQK FGIIKGTMTT THSYTGDQRL LDASHRDLRR ARAAALNIVP TSTGAAKAVA LVLPNLKGKL
301: NGIALRVPTP NVSVVDLVVQ VSKKTLAEEV NQAFRDAAAN ELKGILDVCD EPLVSVDFRC SDVSSTIDAS LSMVMGDDMV KVIAWYDNEW GYSQRVVDLA
401: DIVANQWK
Best Arabidopsis Sequence Match ( AT1G12900.5 )
(BLAST)
001: MNDKAIQNLI FFASNSAIHI FLYYNSLPLL LTSYNKLLSL VAMASATFSV AKPSLQGFSE FSGLRNSSAL PFAKRSSSDE FVSFVSFQTS AMRSNGGYRK
101: GVTEAKIKVA INGFGRIGRN FLRCWHGRKD SPLDVVVIND TGGVKQASHL LKYDSTLGIF DADVKPSGDS ALSVDGKIIK IVSDRNPSNL PWGELGIDLV
201: IEGTGVFVDR DGAGKHLQAG AKKVLITAPG KGDIPTYVVG VNAELYSHED TIISNASCTT NCLAPFVKVL DQKFGIIKGT MTTTHSYTGD QRLLDASHRD
301: LRRARAAALN IVPTSTGAAK AVALVLPNLK GKLNGIALRV PTPNVSVVDL VVQVSKKTFA EEVNAAFRDA AEKELKGILD VCDEPLVSVD FRCSDVSSTI
401: DSSLTMVMGD DMVKVIAWYD NEWGYSQRVV DLADIVANNW K
Arabidopsis Description
GAPA-2glyceraldehyde 3-phosphate dehydrogenase A subunit 2 [Source:TAIR;Acc:AT1G12900]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.