Factsheet for Os04t0459500-02

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

plastid: 17189339
plasma membrane: 19502382
plastid: 21433289
extracellular: 23159799
plasma membrane: 27800704
extracellular: 28232208

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 19502382 doi

M Fujiwara, S Hamada, M Hiratsuka, Y Fukao, T Kawasaki, K Shimamoto

Laboratory of Plant Protein Analysis, Plant Education Unit, Nara Institute of Science and Technology, Takayama, Ikoma, Japan.

msms PMID: 23159799 doi

SG Kim, Y Wang, KH Lee, ZY Park, J Park, J Wu, SJ Kwon, YH Lee, GK Agrawal, R Rakwal, ST Kim, KY Kang

Plant Molecular Biology and Biotechnology Research Center, Gyeongsang National University, Jinju, 660-701, South Korea.

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

msms PMID: 17189339 doi

T Kleffmann, A von Zychlinski, D Russenberger, M Hirsch-Hoffmann, P Gehrig, W Gruissem, S Baginsky

Institute of Plant Sciences, Eidgenössische Technische Hochschule Zurich, 8092 Zurich, Switzerland.

msms PMID: 28232208 doi

Y Wang, R Gupta, W Song, HH Huh, SE Lee, J Wu, GK Agrawal, R Rakwal, KY Kang, SR Park, ST Kim

Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea., Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea. Electronic address: stkim71@pusan.ac.kr., Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Division of Applied Life Science (BK21 Program), Gyeongsang National University, Jinju, South Korea., National Academy of Agricultural Science, Rural Development Administration, Suwon 441-707, South Korea. Electronic address: srpark@korea.kr., Plant Proteomics Group, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal; Faculty of Health and Sport Sciences, Tsukuba International Academy for Sport Studies (TIAS), University of Tsukuba, 1-1-1 Tennodai, Tsukuba, 305-8574, Ibaraki, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0303000-02
Os03t0306800-01
Os04t0596900-00

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G26650.1	Os04t0596900-00	AT1G32060.1	17947231
AT3G26650.1	Os01t0303000-02	AT3G62410.1	17947231
AT3G26650.1	Os03t0306800-01	AT3G62410.1	17947231

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d003429_P001	Maize	plastid	95.77	95.53
TraesCS2D01G322900.1	Wheat	plastid	93.03	93.27
TraesCS2B01G342200.1	Wheat	plastid	93.03	93.27
TraesCS2A01G344600.1	Wheat	golgi, plastid	92.79	93.02
HORVU0Hr1G004830.6	Barley	plastid	92.79	91.42
KXG26468	Sorghum	plastid	94.28	90.67
Zm00001d025607_P001	Maize	cytosol, plastid	80.85	87.37
Zm00001d025599_P001	Maize	plastid	87.31	87.1
Zm00001d025593_P001	Maize	plastid	86.57	86.35
Bra026948.1-P	Field mustard	plastid	85.57	86.22
CDY16038	Canola	plastid	85.57	86.22
CDY26599	Canola	plastid	85.57	86.22
AT3G26650.1	Thale cress	plastid	84.83	86.11
CDX98028	Canola	plastid	85.32	85.96
CDY19412	Canola	plastid	85.32	85.96
Bra019797.1-P	Field mustard	plastid	85.07	85.71
GSMUA_Achr10P...	Banana	plastid	66.92	85.67
KRG94751	Soybean	extracellular, nucleus	85.82	85.61
CDY28536	Canola	plastid	80.85	85.53
Bra025219.1-P	Field mustard	plastid	80.6	85.26
CDY13649	Canola	plastid	80.6	85.26
CDX83635	Canola	plastid	80.6	85.26
KRH06774	Soybean	nucleus	85.32	85.11
Bra032939.1-P	Field mustard	plastid	69.9	84.13
PGSC0003DMT400030050	Potato	cytosol	83.33	83.96
Solyc04g009030.2.1	Tomato	plastid	83.33	83.96
VIT_14s0068g00680.t01	Wine grape	plastid	84.08	83.66
CDY48981	Canola	plastid	76.37	83.42
Solyc02g020940.2.1	Tomato	plastid	82.34	80.93
AT1G12900.5	Thale cress	endoplasmic reticulum	84.83	77.32
GSMUA_Achr6P16250_001	Banana	plastid	84.08	77.17
KRH70104	Soybean	plastid	50.25	73.19
Os03t0129300-01	Rice	extracellular, plastid	72.89	65.99
Os04t0486600-01	Rice	plastid	39.55	47.18
Os08t0126300-01	Rice	cytosol	38.31	45.7
Os02t0601300-01	Rice	plasma membrane	38.31	45.7
Os02t0171100-01	Rice	extracellular, plastid	41.29	40.39
Os06t0666600-01	Rice	extracellular, plastid	41.54	40.24

Protein Annotations

KEGG:00010+1.2.1.12	KEGG:00710+1.2.1.12	MapMan:1.2.3	Gene3D:3.30.360.10	Gene3D:3.40.50.720	EntrezGene:4336044
EMBL:AK071685	EMBL:AK103922	EMBL:AK103932	ProteinID:BAF14898.1	ProteinID:BAS89533.1	ProteinID:CAD40906.1
ProteinID:CAE01532.1	ProteinID:EAZ30968.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005975	GO:GO:0006006	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0016620
GO:GO:0050661	GO:GO:0051287	GO:GO:0055114	InterPro:GlycerAld/Erythrose_P_DH	InterPro:GlycerAld_3-P_DH_AS	InterPro:GlycerAld_3-P_DH_NAD(P)-bd
InterPro:GlycerAld_3-P_DH_cat	InterPro:Glyceraldehyde-3-P_DH_1	InterPro:NAD(P)-bd_dom_sf	EnsemblPlantsGene:Os04g0459500	EnsemblPlants:Os04t0459500-02	PFAM:PF00044
PFAM:PF02800	PIRSF:PIRSF000149	PRINTS:PR00078	ScanProsite:PS00071	PANTHER:PTHR43148	PANTHER:PTHR43148:SF5
UniProt:Q7X8A1	SMART:SM00846	SUPFAM:SSF51735	SUPFAM:SSF55347	TIGRFAMs:TIGR01534	UniParc:UPI00001B0BAD
RefSeq:XP_015635988.1	SEG:seg	:	:	:	:

Description

Similar to H0219H12.1 protein. (Os04t0459500-01);Similar to GADPH (383 AA) (Fragment). (Os04t0459500-02)

Coordinates

chr4:+:22937162..22939010

Molecular Weight (calculated)

42718.1 Da

IEP (calculated)

7.835

GRAVY (calculated)

-0.017

Length

402 amino acids

Sequence
(BLAST)

001: MASPMLSAAT VPLQGGGLSE FSGLRSSSSL PLRRNATSDD FMNAVSFRTH AVGTSGGARR APTEAKLKVA INGFGRIGRN FLRCWHGRGD SSPLDVIAIN
101: DTGGVKQASH LLKYDSTLGI FDADVKPVGD NAISVDGKVI KVVSDRNPSN LPWGELGIDL VIEGTGVFVD RDGAGKHIQA GAKKVLITAP GKGDIPTYVV
201: GVNADQYSPD EPIISNASCT TNCLAPFVKI LDQKFGIIKG TMTTTHSYTG DQRLLDASHR DLRRARAAAL NIVPTSTGAA KAVALVLPNL KGKLNGIALR
301: VPTPNVSVVD LVVQVSKKTL AEEVNQAFRD SAANELKGIL EVCDVPLVSV DFRCSDVSCT IDASLSMVMG DDMVKVIAWY DNEWGYSQRV VDLADIVANQ
401: WK

Best Arabidopsis Sequence Match ( AT1G12900.5 )
(BLAST)

001: MNDKAIQNLI FFASNSAIHI FLYYNSLPLL LTSYNKLLSL VAMASATFSV AKPSLQGFSE FSGLRNSSAL PFAKRSSSDE FVSFVSFQTS AMRSNGGYRK
101: GVTEAKIKVA INGFGRIGRN FLRCWHGRKD SPLDVVVIND TGGVKQASHL LKYDSTLGIF DADVKPSGDS ALSVDGKIIK IVSDRNPSNL PWGELGIDLV
201: IEGTGVFVDR DGAGKHLQAG AKKVLITAPG KGDIPTYVVG VNAELYSHED TIISNASCTT NCLAPFVKVL DQKFGIIKGT MTTTHSYTGD QRLLDASHRD
301: LRRARAAALN IVPTSTGAAK AVALVLPNLK GKLNGIALRV PTPNVSVVDL VVQVSKKTFA EEVNAAFRDA AEKELKGILD VCDEPLVSVD FRCSDVSSTI
401: DSSLTMVMGD DMVKVIAWYD NEWGYSQRVV DLADIVANNW K

Arabidopsis Description

GAPA-2glyceraldehyde 3-phosphate dehydrogenase A subunit 2 [Source:TAIR;Acc:AT1G12900]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.