Factsheet for Os03t0306800-01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
plastid 6
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	secretory
EpiLoc:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	extracellular

extracellular: 23159799

msms PMID: 23159799 doi

SG Kim, Y Wang, KH Lee, ZY Park, J Park, J Wu, SJ Kwon, YH Lee, GK Agrawal, R Rakwal, ST Kim, KY Kang

Plant Molecular Biology and Biotechnology Research Center, Gyeongsang National University, Jinju, 660-701, South Korea.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os04t0459500-02
Os04t0596900-00
Os04t0654700-02
Os12t0182200-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G47400.1	Os12t0182200-01	AT1G34430.1	21798944
AT3G62410.1	Os04t0654700-02	AT1G22920.1	21798944
AT3G62410.1	Os04t0596900-00	AT1G32060.1	17947231
AT3G62410.1	Os04t0459500-02	AT3G26650.1	17947231

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G184400.1	Wheat	plastid	69.47	70.0
TraesCS4D01G185400.1	Wheat	plastid	67.18	67.69
TraesCS4A01G120600.1	Wheat	plastid	62.6	63.08
Zm00001d028880_P001	Maize	plastid	54.2	56.35
CDY25110	Canola	plastid	54.2	55.04
Os01t0303000-02	Rice	extracellular, plasma membrane, plastid	51.91	54.84
EER94980	Sorghum	plastid	54.2	54.62
Bra003499.1-P	Field mustard	plastid	53.44	54.26
CDX67892	Canola	plastid	53.44	54.26
GSMUA_Achr11P...	Banana	plastid	51.91	52.71
CDX76635	Canola	plastid	51.15	51.94
GSMUA_Achr8P10530_001	Banana	plastid	50.38	51.56
CDY11420	Canola	plastid	51.15	51.54
Bra007678.1-P	Field mustard	plastid	51.15	51.54
CDY51422	Canola	plastid	48.09	50.81
Bra021396.1-P	Field mustard	plastid	47.33	50.0
CDX80101	Canola	plastid	47.33	49.21
AT2G47400.1	Thale cress	plastid	46.56	49.19
AT3G62410.1	Thale cress	plastid	48.85	48.85
CDX95723	Canola	plastid	46.56	48.41
CDY55379	Canola	plastid	46.56	48.41
Bra004459.1-P	Field mustard	plastid	46.56	48.03
CDY27491	Canola	plastid	45.8	48.0
HORVU4Hr1G053940.2	Barley	plastid	58.02	47.8
PGSC0003DMT400018798	Potato	cytosol	45.04	46.83
Bra000451.1-P	Field mustard	plastid	45.04	46.83
CDX83329	Canola	plastid	45.04	46.83
Solyc06g009630.1.1	Tomato	plastid	45.04	46.46
KRH69219	Soybean	plastid	45.04	46.09
KRH31794	Soybean	plastid	44.27	44.96
KRH68260	Soybean	plastid	45.04	44.7
PGSC0003DMT400023336	Potato	plastid	41.98	44.35
Solyc01g079470.2.1	Tomato	plastid	41.98	44.35
Os08t0513100-01	Rice	cytosol, nucleus	21.37	43.75
KRG96526	Soybean	nucleus	50.38	40.0
VIT_01s0026g02480.t01	Wine grape	extracellular	45.8	30.46

Protein Annotations

EMBL:AK103722	EnsemblPlants:Os03t0306800-01	EnsemblPlantsGene:Os03g0306800	EntrezGene:4332603	InterPro:DUF_CP12	PANTHER:PTHR33921
PANTHER:PTHR33921:SF9	PFAM:PF02672	ProteinID:ABF95532.1	ProteinID:BAF11804.1	ProteinID:BAS83816.1	ProteinID:EAZ26657.1
RefSeq:XP_015631801.1	SEG:seg	SMART:SM01093	UniParc:UPI0000DB41EB	UniProt:Q10MJ5	MapMan:35.1

Description

chloroplast protein 12, Calvin cycle protein CP12Similar to CP12 (Fragment). (Os03t0306800-01)

Coordinates

chr3:+:10910568..10911189

Molecular Weight (calculated)

13898.2 Da

IEP (calculated)

4.375

GRAVY (calculated)

-0.438

Length

131 amino acids

Sequence
(BLAST)

001: MATILAVAAM ATFQAPTTLP GPLAPTLPVR RNVVSFAGRR QGRALGRLAV VVAAGSPTPP ELAQKVSESI KQAEETCAGD PEGGECAAAW DEVEELSAAA
101: SHARDRKKDS DPLEEYCKDN PETDECRTYE D

Best Arabidopsis Sequence Match ( AT3G62410.1 )
(BLAST)

001: MATIATGLNI ATQRVFVTSE NRPVCLAGPV HLNNSWNLGS RTTNRMMKLQ PIKAAPEGGI SDVVEKSIKE AQETCAGDPV SGECVAAWDE VEELSAAASH
101: ARDKKKADGS DPLEEYCKDN PETNECRTYD N

Arabidopsis Description

CP12-2Calvin cycle protein CP12-2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LZP9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.