Factsheet for Solyc01g079470.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 8

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g020940.2.1
Solyc04g009030.2.1
Solyc06g073150.2.1
Solyc06g075780.1.1
Solyc08g076220.2.1
Solyc11g017250.1.1
Solyc11g017300.1.1
Solyc11g073060.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G47400.1	Solyc11g017250.1.1	AT1G34430.1	21798944
AT2G47400.1	Solyc06g075780.1.1	AT3G46090.1	17259181
AT2G47400.1	Solyc11g073060.1.1	AT3G46090.1	17259181
AT3G62410.1	Solyc06g073150.2.1	AT1G22920.1	21798944
AT3G62410.1	Solyc11g017300.1.1	AT1G22920.1	21798944
AT3G62410.1	Solyc08g076220.2.1	AT1G32060.1	17947231
AT3G62410.1	Solyc02g020940.2.1	AT3G26650.1	17947231
AT3G62410.1	Solyc04g009030.2.1	AT3G26650.1	17947231

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400023336	Potato	plastid	70.97	70.97
Solyc06g009630.1.1	Tomato	plastid	66.13	64.57
Bra007678.1-P	Field mustard	plastid	55.65	53.08
CDY11420	Canola	plastid	55.65	53.08
Bra003499.1-P	Field mustard	plastid	54.03	51.94
CDX67892	Canola	plastid	54.03	51.94
CDY25110	Canola	plastid	54.03	51.94
CDY27491	Canola	plastid	50.81	50.4
Bra021396.1-P	Field mustard	plastid	50.0	50.0
CDY51422	Canola	plastid	50.0	50.0
Bra004459.1-P	Field mustard	plastid	50.81	49.61
CDX80101	Canola	plastid	50.0	49.21
AT2G47400.1	Thale cress	plastid	49.19	49.19
CDY55379	Canola	plastid	48.39	47.62
CDX95723	Canola	plastid	48.39	47.62
AT3G62410.1	Thale cress	plastid	50.0	47.33
CDX76635	Canola	plastid	49.19	47.29
CDX83329	Canola	plastid	47.58	46.83
Bra000451.1-P	Field mustard	plastid	47.58	46.83
GSMUA_Achr1P13010_001	Banana	plastid	48.39	46.51
KRH69219	Soybean	plastid	47.58	46.09
TraesCS2D01G034400.1	Wheat	plastid	46.77	46.03
TraesCS2B01G048200.1	Wheat	plastid	46.77	46.03
TraesCS2A01G035100.1	Wheat	plastid	46.77	46.03
Os01t0303000-02	Rice	extracellular, plasma membrane, plastid	45.97	45.97
KRH31794	Soybean	plastid	47.58	45.74
GSMUA_Achr11P...	Banana	plastid	46.77	44.96
GSMUA_Achr8P10530_001	Banana	plastid	45.16	43.75
KRH68260	Soybean	plastid	45.16	42.42
Os03t0306800-01	Rice	extracellular	44.35	41.98
GSMUA_Achr11P...	Banana	plastid	43.55	41.86
EER88061	Sorghum	plastid	42.74	41.09
TraesCS4D01G185400.1	Wheat	plastid	42.74	40.77
TraesCS4A01G120600.1	Wheat	plastid	42.74	40.77
TraesCS4B01G184400.1	Wheat	plastid	42.74	40.77
Zm00001d028880_P001	Maize	plastid	39.52	38.89
EER94980	Sorghum	plastid	39.52	37.69
Zm00001d044925_P001	Maize	plastid	41.13	36.43
KRG96526	Soybean	nucleus	43.55	32.73
HORVU4Hr1G053940.2	Barley	plastid	41.94	32.7
VIT_01s0026g02480.t01	Wine grape	extracellular	46.77	29.44
Solyc04g082910.1.1	Tomato	plastid	14.52	20.69

Protein Annotations

EnsemblPlants:Solyc01g079470.2.1	EnsemblPlantsGene:Solyc01g079470.2	InterPro:DUF_CP12	PANTHER:PTHR33921	PANTHER:PTHR33921:SF9	PFAM:PF02672
SEG:seg	SMART:SM01093	UniParc:UPI0002761D3D	UniProt:K4AXJ2	MapMan:35.2	:

Description

No Description!

Coordinates

chr1:+:78516456..78517162

Molecular Weight (calculated)

13402.5 Da

IEP (calculated)

4.758

GRAVY (calculated)

-0.668

Length

124 amino acids

Sequence
(BLAST)

001: MATIAGVSLT SPKFLAKNSN SPNFKPFKLP CLNNPWKKSS TKFGLVCSAA PDNKLSDLVA DSVKGAEETC NENPASGECA AAWDVVEEAS AAASHARDKK
101: KQEDVLENYC KENPETDECR TYDN

Best Arabidopsis Sequence Match ( AT2G47400.1 )
(BLAST)

001: MTTIAAAGLN VATPRVVVRP VARVLGPVRL NYPWKFGSMK RMVVVKATSE GEISEKVEKS IQEAKETCAD DPVSGECVAA WDEVEELSAA ASHARDKKKA
101: GGSDPLEEYC NDNPETDECR TYDN

Arabidopsis Description

CP12-1Calvin cycle protein CP12-1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O22914]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.