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Banana
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Banana
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 6
  • mitochondrion 1
  • cytosol 1
  • nucleus 2
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:plastid
EpiLoc:plastid
iPSORT:mitochondrion
MultiLoc:cytosol
Plant-mPloc:nucleus
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr1P23890_001
GSMUA_Achr2P09720_001
GSMUA_Achr3P17420_001
GSMUA_Achr6P16250_001

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G47400.1 GSMUA_Achr3P17420_001 AT1G34430.1 21798944
AT3G62410.1 GSMUA_Achr10P... AT1G22920.1 21798944
AT3G62410.1 GSMUA_Achr1P23890_001 AT1G32060.1 17947231
AT3G62410.1 GSMUA_Achr2P09720_001 AT1G32060.1 17947231
AT3G62410.1 GSMUA_Achr10P... AT3G26650.1 17947231
AT3G62410.1 GSMUA_Achr6P16250_001 AT3G26650.1 17947231
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
GSMUA_Achr11P... Banana plastid 73.44 72.87
Os01t0303000-02 Rice extracellular, plasma membrane, plastid 60.94 62.9
TraesCS2A01G035100.1 Wheat plastid 59.38 60.32
TraesCS2B01G048200.1 Wheat plastid 59.38 60.32
TraesCS2D01G034400.1 Wheat plastid 59.38 60.32
GSMUA_Achr1P13010_001 Banana plastid 56.25 55.81
KRH31794 Soybean plastid 54.69 54.26
CDX76635 Canola plastid 54.69 54.26
Zm00001d028880_P001 Maize plastid 50.78 51.59
KRH69219 Soybean plastid 51.56 51.56
CDY25110 Canola plastid 51.56 51.16
Bra007678.1-P Field mustard plastid 51.56 50.77
CDY11420 Canola plastid 51.56 50.77
EER94980 Sorghum plastid 51.56 50.77
EER88061 Sorghum plastid 50.78 50.39
GSMUA_Achr11P... Banana plastid 50.78 50.39
CDX67892 Canola plastid 50.78 50.39
Os03t0306800-01 Rice extracellular 51.56 50.38
CDX80101 Canola plastid 49.22 50.0
Bra003499.1-P Field mustard plastid 50.0 49.61
CDY55379 Canola plastid 48.44 49.21
CDX95723 Canola plastid 48.44 49.21
TraesCS4A01G120600.1 Wheat plastid 49.22 48.46
CDY51422 Canola plastid 46.88 48.39
Solyc06g009630.1.1 Tomato plastid 47.66 48.03
Bra004459.1-P Field mustard plastid 47.66 48.03
CDY27491 Canola plastid 46.88 48.0
TraesCS4B01G184400.1 Wheat plastid 48.44 47.69
CDX83329 Canola plastid 46.88 47.62
PGSC0003DMT400018798 Potato cytosol 46.88 47.62
Bra000451.1-P Field mustard plastid 46.88 47.62
AT2G47400.1 Thale cress plastid 46.09 47.58
Bra021396.1-P Field mustard plastid 46.09 47.58
AT3G62410.1 Thale cress plastid 48.44 47.33
TraesCS4D01G185400.1 Wheat plastid 47.66 46.92
Solyc01g079470.2.1 Tomato plastid 43.75 45.16
PGSC0003DMT400023336 Potato plastid 42.97 44.35
Zm00001d044925_P001 Maize plastid 48.44 44.29
KRH68260 Soybean plastid 45.31 43.94
HORVU4Hr1G053940.2 Barley plastid 52.34 42.14
KRG96526 Soybean nucleus 46.09 35.76
VIT_01s0026g02480.t01 Wine grape extracellular 46.88 30.46
Protein Annotations
EnsemblPlants:GSMUA_Achr8P10530_001EnsemblPlants:GSMUA_Achr8T10530_001EnsemblPlantsGene:GSMUA_Achr8G10530_001InterPro:DUF_CP12PANTHER:PTHR33921PANTHER:PTHR33921:SF9
PFAM:PF02672SEG:segSMART:SM01093UniParc:UPI000294F2D4UniProt:M0TPA6MapMan:35.1
Description
Calvin cycle protein CP12 [Source:GMGC_GENE;Acc:GSMUA_Achr8G10530_001]
Coordinates
chr8:-:7532118..7532789
Molecular Weight (calculated)
13524.7 Da
IEP (calculated)
5.225
GRAVY (calculated)
-0.534
Length
128 amino acids
Sequence
(BLAST)
001: MLMAATAASS VRLSTTGAVS TKAQLPRPQR PHARLLPLLG GRRRAVLAAS APSTPPDISD KVSESIKKAE DACSGDAVSG ECAAAWDEVE ELSAAASHAR
101: DKLKANSDPL ENYCKDNPET DECRTYDN
Best Arabidopsis Sequence Match ( AT3G62410.1 )
(BLAST)
001: MATIATGLNI ATQRVFVTSE NRPVCLAGPV HLNNSWNLGS RTTNRMMKLQ PIKAAPEGGI SDVVEKSIKE AQETCAGDPV SGECVAAWDE VEELSAAASH
101: ARDKKKADGS DPLEEYCKDN PETNECRTYD N
Arabidopsis Description
CP12-2Calvin cycle protein CP12-2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LZP9]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.