Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 9
- nucleus 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra027469.1-P | |
| Bra028057.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G47400.1 | Bra028057.1-P | AT1G34430.1 | 21798944 |
| AT2G47400.1 | Bra027469.1-P | AT5G42980.1 | 15352244 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY51422 | Canola | plastid | 98.39 | 98.39 |
| AT2G47400.1 | Thale cress | plastid | 85.48 | 85.48 |
| Bra004459.1-P | Field mustard | plastid | 87.1 | 85.04 |
| Bra000451.1-P | Field mustard | plastid | 82.26 | 80.95 |
| Bra007678.1-P | Field mustard | plastid | 72.58 | 69.23 |
| Bra003499.1-P | Field mustard | plastid | 68.55 | 65.89 |
| Solyc06g009630.1.1 | Tomato | plastid | 54.03 | 52.76 |
| GSMUA_Achr1P13010_001 | Banana | plastid | 54.84 | 52.71 |
| PGSC0003DMT400018798 | Potato | cytosol | 51.61 | 50.79 |
| Solyc01g079470.2.1 | Tomato | plastid | 50.0 | 50.0 |
| Zm00001d028880_P001 | Maize | plastid | 50.0 | 49.21 |
| EER94980 | Sorghum | plastid | 50.0 | 47.69 |
| TraesCS4A01G120600.1 | Wheat | plastid | 50.0 | 47.69 |
| KRH69219 | Soybean | plastid | 49.19 | 47.66 |
| Os01t0303000-02 | Rice | extracellular, plasma membrane, plastid | 47.58 | 47.58 |
| PGSC0003DMT400023336 | Potato | plastid | 47.58 | 47.58 |
| Os03t0306800-01 | Rice | extracellular | 50.0 | 47.33 |
| GSMUA_Achr11P... | Banana | plastid | 49.19 | 47.29 |
| TraesCS4B01G184400.1 | Wheat | plastid | 49.19 | 46.92 |
| TraesCS4D01G185400.1 | Wheat | plastid | 49.19 | 46.92 |
| TraesCS2A01G035100.1 | Wheat | plastid | 47.58 | 46.83 |
| TraesCS2B01G048200.1 | Wheat | plastid | 47.58 | 46.83 |
| TraesCS2D01G034400.1 | Wheat | plastid | 47.58 | 46.83 |
| GSMUA_Achr8P10530_001 | Banana | plastid | 47.58 | 46.09 |
| KRH31794 | Soybean | plastid | 47.58 | 45.74 |
| GSMUA_Achr11P... | Banana | plastid | 47.58 | 45.74 |
| KRH68260 | Soybean | plastid | 47.58 | 44.7 |
| EER88061 | Sorghum | plastid | 45.16 | 43.41 |
| Zm00001d044925_P001 | Maize | plastid | 45.97 | 40.71 |
| KRG96526 | Soybean | nucleus | 53.23 | 40.0 |
| HORVU4Hr1G053940.2 | Barley | plastid | 49.19 | 38.36 |
| VIT_01s0026g02480.t01 | Wine grape | extracellular | 54.84 | 34.52 |
| Bra015733.1-P | Field mustard | plastid | 34.68 | 31.85 |
Protein Annotations
Description
AT2G47400 (E=6e-049) CP12-1, CP12 | CP12-1
Coordinates
chrA01:-:25389094..25389468
Molecular Weight (calculated)
13404.6 Da
IEP (calculated)
4.429
GRAVY (calculated)
-0.477
Length
124 amino acids
Sequence
(BLAST)
(BLAST)
001: MTTIAATGLN VATPRVFVRP VARLSAPVRL NYPWKFSSMN RMVMSVKATA EGGISDKVEK SIQEATETCA DDPVSGECVA AWDEAEELSA AASHARDKKK
101: AGGSDPLEEY CSDNPETDEC RTYD
101: AGGSDPLEEY CSDNPETDEC RTYD
001: MTTIAAAGLN VATPRVVVRP VARVLGPVRL NYPWKFGSMK RMVVVKATSE GEISEKVEKS IQEAKETCAD DPVSGECVAA WDEVEELSAA ASHARDKKKA
101: GGSDPLEEYC NDNPETDECR TYDN
101: GGSDPLEEYC NDNPETDECR TYDN
Arabidopsis Description
CP12-1Calvin cycle protein CP12-1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O22914]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.