Factsheet for VIT_01s0026g02480.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 2
plastid 1
extracellular 4
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	plastid
MultiLoc:	extracellular
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_02s0109g00080.t01
VIT_03s0038g04360.t01
VIT_14s0068g00680.t01
VIT_18s0072g01000.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G47400.1	VIT_18s0072g01000.t01	AT1G34430.1	21798944
AT3G62410.1	VIT_03s0038g04360.t01	AT1G22920.1	21798944
AT3G62410.1	VIT_02s0109g00080.t01	AT1G32060.1	17947231
AT3G62410.1	VIT_14s0068g00680.t01	AT3G26650.1	17947231

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT2G47400.1	Thale cress	plastid	35.03	55.65
CDY51422	Canola	plastid	35.03	55.65
Bra021396.1-P	Field mustard	plastid	34.52	54.84
CDY55379	Canola	plastid	35.03	54.76
CDX80101	Canola	plastid	35.03	54.76
CDX95723	Canola	plastid	34.52	53.97
KRH69219	Soybean	plastid	35.03	53.91
CDY25110	Canola	plastid	35.03	53.49
GSMUA_Achr11P...	Banana	plastid	35.03	53.49
CDX76635	Canola	plastid	35.03	53.49
PGSC0003DMT400023336	Potato	plastid	33.5	53.23
PGSC0003DMT400018798	Potato	cytosol	34.01	53.17
Bra004459.1-P	Field mustard	plastid	34.01	52.76
CDX67892	Canola	plastid	34.52	52.71
Bra003499.1-P	Field mustard	plastid	34.52	52.71
KRH68260	Soybean	plastid	35.03	52.27
KRH31794	Soybean	plastid	34.01	51.94
Bra007678.1-P	Field mustard	plastid	34.01	51.54
CDY11420	Canola	plastid	34.01	51.54
GSMUA_Achr1P13010_001	Banana	plastid	33.5	51.16
Bra000451.1-P	Field mustard	plastid	32.49	50.79
CDX83329	Canola	plastid	32.49	50.79
KRG96526	Soybean	nucleus	41.62	49.7
CDY27491	Canola	plastid	31.47	49.6
Os01t0303000-02	Rice	extracellular, plasma membrane, plastid	30.96	49.19
AT3G62410.1	Thale cress	plastid	32.49	48.85
GSMUA_Achr11P...	Banana	plastid	31.47	48.06
GSMUA_Achr8P10530_001	Banana	plastid	30.46	46.88
TraesCS2A01G035100.1	Wheat	plastid	29.95	46.83
TraesCS2D01G034400.1	Wheat	plastid	29.95	46.83
TraesCS2B01G048200.1	Wheat	plastid	29.95	46.83
Solyc01g079470.2.1	Tomato	plastid	29.44	46.77
Solyc06g009630.1.1	Tomato	plastid	29.95	46.46
TraesCS4D01G185400.1	Wheat	plastid	30.46	46.15
Os03t0306800-01	Rice	extracellular	30.46	45.8
EER94980	Sorghum	plastid	29.95	45.38
Zm00001d028880_P001	Maize	plastid	28.93	45.24
EER88061	Sorghum	plastid	29.44	44.96
TraesCS4A01G120600.1	Wheat	plastid	28.93	43.85
TraesCS4B01G184400.1	Wheat	plastid	28.93	43.85
Zm00001d044925_P001	Maize	plastid	29.95	42.14
HORVU4Hr1G053940.2	Barley	plastid	29.95	37.11
VIT_18s0122g00460.t01	Wine grape	plastid	20.3	29.85

Protein Annotations

EntrezGene:100267103	wikigene:100267103	MapMan:35.1	ProteinID:CCB56542	ProteinID:CCB56542.1	InterPro:DUF_CP12
UniProt:F6HPR1	EMBL:FN596002	EntrezGene:LOC100267103	wikigene:LOC100267103	PFAM:PF02672	PANTHER:PTHR33921
PANTHER:PTHR33921:SF10	SMART:SM01093	SignalP:SignalP-noTM	TIGR:TC62067	UniParc:UPI0002108835	ArrayExpress:VIT_01s0026g02480
EnsemblPlantsGene:VIT_01s0026g02480	EnsemblPlants:VIT_01s0026g02480.t01	unigene:Vvi.6799	RefSeq:XP_002275043	RefSeq:XP_002275043.1	SEG:seg

Description

No Description!

Coordinates

chr1:+:12080562..12082199

Molecular Weight (calculated)

22349.3 Da

IEP (calculated)

6.502

GRAVY (calculated)

-0.561

Length

197 amino acids

Sequence
(BLAST)

001: MPNRIKFVLL TLNAIISPSW YDVEAYEWFL HDNECVFLKH YRNRLYRLHY HILSTLPHCC TAATRRRTTM ATIAGVSLST PRVLARAADS PKSQTIQSPW
101: LSNPWKRPSR FGAGRMCVRP VAAAPDSISE KVVESIKNAE EKCSDDPASG ECVAAWDEVE ELSAAASHAR DKKKESDPLE TYCKDNPEDE ECRTYED

Best Arabidopsis Sequence Match ( AT3G62410.1 )
(BLAST)

001: MATIATGLNI ATQRVFVTSE NRPVCLAGPV HLNNSWNLGS RTTNRMMKLQ PIKAAPEGGI SDVVEKSIKE AQETCAGDPV SGECVAAWDE VEELSAAASH
101: ARDKKKADGS DPLEEYCKDN PETNECRTYD N

Arabidopsis Description

CP12-2Calvin cycle protein CP12-2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LZP9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.