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Banana
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Banana
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • nucleus 3
  • plastid 6
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:mitochondrion, nucleus, plastid
BaCelLo:nucleus
EpiLoc:plastid
iPSORT:mitochondrion
MultiLoc:plastid
Plant-mPloc:nucleus
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr1P23890_001
GSMUA_Achr2P09720_001
GSMUA_Achr3P17420_001
GSMUA_Achr6P16250_001

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G47400.1 GSMUA_Achr3P17420_001 AT1G34430.1 21798944
AT3G62410.1 GSMUA_Achr10P... AT1G22920.1 21798944
AT3G62410.1 GSMUA_Achr1P23890_001 AT1G32060.1 17947231
AT3G62410.1 GSMUA_Achr2P09720_001 AT1G32060.1 17947231
AT3G62410.1 GSMUA_Achr10P... AT3G26650.1 17947231
AT3G62410.1 GSMUA_Achr6P16250_001 AT3G26650.1 17947231
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
GSMUA_Achr11P... Banana plastid 62.79 62.79
GSMUA_Achr11P... Banana plastid 61.24 61.24
GSMUA_Achr8P10530_001 Banana plastid 55.81 56.25
CDY25110 Canola plastid 55.81 55.81
CDY51422 Canola plastid 53.49 55.65
Bra003499.1-P Field mustard plastid 55.04 55.04
CDX67892 Canola plastid 55.04 55.04
Bra021396.1-P Field mustard plastid 52.71 54.84
Bra007678.1-P Field mustard plastid 55.04 54.62
CDY11420 Canola plastid 55.04 54.62
CDX76635 Canola plastid 54.26 54.26
AT2G47400.1 Thale cress plastid 51.94 54.03
CDX95723 Canola plastid 52.71 53.97
CDX80101 Canola plastid 52.71 53.97
CDY55379 Canola plastid 52.71 53.97
CDY27491 Canola plastid 51.16 52.8
Bra004459.1-P Field mustard plastid 51.16 51.97
AT3G62410.1 Thale cress plastid 52.71 51.91
CDX83329 Canola plastid 50.39 51.59
Bra000451.1-P Field mustard plastid 50.39 51.59
Solyc06g009630.1.1 Tomato plastid 49.61 50.39
KRH69219 Soybean plastid 48.84 49.22
PGSC0003DMT400018798 Potato cytosol 48.06 49.21
KRH31794 Soybean plastid 48.84 48.84
KRH68260 Soybean plastid 49.61 48.48
PGSC0003DMT400023336 Potato plastid 46.51 48.39
Solyc01g079470.2.1 Tomato plastid 46.51 48.39
KRG96526 Soybean nucleus 49.61 38.79
VIT_01s0026g02480.t01 Wine grape extracellular 51.16 33.5
Protein Annotations
EnsemblPlants:GSMUA_Achr1P13010_001EnsemblPlants:GSMUA_Achr1T13010_001EnsemblPlantsGene:GSMUA_Achr1G13010_001InterPro:DUF_CP12PANTHER:PTHR33921PANTHER:PTHR33921:SF9
PFAM:PF02672SEG:segSMART:SM01093UniParc:UPI000295241AUniProt:M0RZF9MapMan:35.2
Description
Calvin cycle protein CP12 [Source:GMGC_GENE;Acc:GSMUA_Achr1G13010_001]
Coordinates
chr1:+:9961279..9962067
Molecular Weight (calculated)
13866.1 Da
IEP (calculated)
4.850
GRAVY (calculated)
-0.623
Length
129 amino acids
Sequence
(BLAST)
001: MATAPAGVST SARGVVSSKA ELPKPQLSKG MLRLPWASRR RASSRRLVLV ASSPSTPPNI SEKVVESIKK AEETCAEDAA SGECAAAWDE VEELSAAASH
101: ARDKLKTSDP LEEYCKDNPE TDECRTYED
Best Arabidopsis Sequence Match ( AT2G47400.1 )
(BLAST)
001: MTTIAAAGLN VATPRVVVRP VARVLGPVRL NYPWKFGSMK RMVVVKATSE GEISEKVEKS IQEAKETCAD DPVSGECVAA WDEVEELSAA ASHARDKKKA
101: GGSDPLEEYC NDNPETDECR TYDN
Arabidopsis Description
CP12-1Calvin cycle protein CP12-1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O22914]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.