CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 7
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX83635
CDY04768
CDY13649
CDY21400
CDY22582
CDY25761
CDY28536
CDY32970
CDY43592
CDY48981
CDY59208

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G62410.1	CDY04768	AT1G22920.1	21798944
AT3G62410.1	CDY21400	AT1G22920.1	21798944
AT3G62410.1	CDY25761	AT1G22920.1	21798944
AT3G62410.1	CDY22582	AT1G32060.1	17947231
AT3G62410.1	CDY59208	AT1G32060.1	17947231
AT3G62410.1	CDX83635	AT3G26650.1	17947231
AT3G62410.1	CDY13649	AT3G26650.1	17947231
AT3G62410.1	CDY28536	AT3G26650.1	17947231
AT3G62410.1	CDY48981	AT3G26650.1	17947231
AT3G62410.1	CDY32970	AT5G42980.1	15352244
AT3G62410.1	CDY43592	AT5G42980.1	15352244

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra003499.1-P	Field mustard	plastid	97.67	97.67
CDY25110	Canola	plastid	95.35	95.35
CDY11420	Canola	plastid	84.5	83.85
AT3G62410.1	Thale cress	plastid	81.4	80.15
CDX76635	Canola	plastid	78.29	78.29
CDY51422	Canola	plastid	67.44	70.16
CDX80101	Canola	plastid	66.67	68.25
CDX95723	Canola	plastid	66.67	68.25
CDY27491	Canola	plastid	65.89	68.0
CDX83329	Canola	plastid	65.12	66.67
CDY55379	Canola	plastid	65.12	66.67
Solyc06g009630.1.1	Tomato	plastid	54.26	55.12
GSMUA_Achr1P13010_001	Banana	plastid	55.04	55.04
Os01t0303000-02	Rice	extracellular, plasma membrane, plastid	52.71	54.84
GSMUA_Achr11P...	Banana	plastid	54.26	54.26
Solyc01g079470.2.1	Tomato	plastid	51.94	54.03
Os03t0306800-01	Rice	extracellular	54.26	53.44
KRH69219	Soybean	plastid	52.71	53.12
KRH68260	Soybean	plastid	54.26	53.03
TraesCS2B01G048200.1	Wheat	plastid	51.16	52.38
TraesCS2A01G035100.1	Wheat	plastid	51.16	52.38
TraesCS4B01G184400.1	Wheat	plastid	52.71	52.31
KRH31794	Soybean	plastid	51.94	51.94
PGSC0003DMT400023336	Potato	plastid	49.61	51.61
TraesCS2D01G034400.1	Wheat	plastid	50.39	51.59
TraesCS4D01G185400.1	Wheat	plastid	51.94	51.54
GSMUA_Achr8P10530_001	Banana	plastid	50.39	50.78
TraesCS4A01G120600.1	Wheat	plastid	50.39	50.0
PGSC0003DMT400018798	Potato	cytosol	48.84	50.0
GSMUA_Achr11P...	Banana	plastid	49.61	49.61
EER88061	Sorghum	plastid	48.06	48.06
EER94980	Sorghum	plastid	46.51	46.15
Zm00001d028880_P001	Maize	plastid	44.96	46.03
Zm00001d044925_P001	Maize	plastid	48.06	44.29
KRG96526	Soybean	nucleus	54.26	42.42
HORVU4Hr1G053940.2	Barley	plastid	50.39	40.88
VIT_01s0026g02480.t01	Wine grape	extracellular	52.71	34.52
CDX88298	Canola	plastid	34.11	32.84
CDX87586	Canola	plastid	32.56	31.11

Protein Annotations

EnsemblPlants:CDX67892	EnsemblPlantsGene:GSBRNA2T00099095001	InterPro:DUF_CP12	PANTHER:PTHR33921	PANTHER:PTHR33921:SF9	PFAM:PF02672
ProteinID:CDX67892	ProteinID:CDX67892.1	SMART:SM01093	UniParc:UPI0004EEC9FB	MapMan:35.1	:

Description

BnaA07g19320D

Coordinates

chrLK031787:+:2774358..2774747

Molecular Weight (calculated)

13918.2 Da

IEP (calculated)

4.566

GRAVY (calculated)

-0.530

Length

129 amino acids

Sequence
(BLAST)

001: MATIAATSLN IGIQLAVITS ESRPVRLAGP VRLNNPWNLG SRTTNRMAAV RPVKATPEGV ISDKVEKSIK DAEETCAGDP VSGECVAAWD EVEELSAAAS
101: HARDKKKDSD PLEEYCKDNP ETSECRTYD

Best Arabidopsis Sequence Match ( AT3G62410.1 )
(BLAST)

001: MATIATGLNI ATQRVFVTSE NRPVCLAGPV HLNNSWNLGS RTTNRMMKLQ PIKAAPEGGI SDVVEKSIKE AQETCAGDPV SGECVAAWDE VEELSAAASH
101: ARDKKKADGS DPLEEYCKDN PETNECRTYD N

Arabidopsis Description

CP12-2Calvin cycle protein CP12-2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LZP9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.